Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5151 ATGGATGTTACTTCTCTGAGTCCTAATAGCAACGCCCAAACCGACCAGCATCCTTTGCTGATGGAGCAGCCAGAAGCCCGTAGCGGCCGTCAGCATGTAATTGACATTGCAAGGAATGATGAAGCTTTATCCACATCGTCGCATACCGATCAACACTCTGAATTGCATGTACCACAGGACGAGGAACAACCAGCTGGGGGTACCCAAGATTCGACTCATCAAACATTATCGTCTACTGCATCCAGATTAAACTCTAGAAATTCCTCTTCGTTCCGAAGAGGTGAGGGGTACGGTCATCAAAGAAGGAGTCCATTAAATTCTGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATTGTGGTTTTGTCATTGTCCAGGAATGAAAATCCCCAAGCCCCATTGTTTGCTTGGGTTGTGGGTTATGCAGCTGGTTGTGTTGCCACACTTCCTATTCTATTTTGGCGTTTTCGAAACCGTTATCAAAGCACTGAACAACATACCTCTCAGCCATCTCAAGGATCTTCTGGAAGCAATCCTCCGGAGCGTACTTATACTTCCATCTATGTTTCTCATGAGGAGAATGGTCATGCTGCACAATCAGCAGCAAGAAACACTTTAATTCCCAGAGCCTTTACCTCTAGGCTCAATGGAATAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTTGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCCCAATTATATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATACTGTGTGCAACTATTTGCTGCTGCCTTCCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACTGTAGAATCTATTAATGCTCTTCCAATCTACAAGTTCAAATTGAAGAACTATCAAAATGTTGATGATCATGATAACATCAATGCAGCTATAGATGAAGGTGGGATTTTAGCTGCCGGGACAGAAAAGGAGCGGATGATTTCCGGAGATGATGCTGTTTGCTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCATGCTCTCATGTCTTTCACGTGGGGTGTGTTGACAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTACAAGTATTGAAGAGTCACCTTAA 1248 0.4279 MDVTSLSPNSNAQTDQHPLLMEQPEARSGRQHVIDIARNDEALSTSSHTDQHSELHVPQDEEQPAGGTQDSTHQTLSSTASRLNSRNSSSFRRGEGYGHQRRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYAAGCVATLPILFWRFRNRYQSTEQHTSQPSQGSSGSNPPERTYTSIYVSHEENGHAAQSAARNTLIPRAFTSRLNGIVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIYKFKLKNYQNVDDHDNINAAIDEGGILAAGTEKERMISGDDAVCCICLAKYADDDELRELPCSHVFHVGCVDKWLKINASCPLCKSEVGTSIEESP* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5151 415 CDD RING-H2_RNF111_like 362 404 - -
Lja3g5151 415 SMART ringv_2 362 404 IPR011016 GO:0008270
Lja3g5151 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Lja3g5151 415 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Lja3g5151 415 Pfam Ring finger domain 363 404 IPR001841 -
Lja3g5151 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 412 - -
Lja3g5151 415 SUPERFAMILY RING/U-box 355 410 - -
Lja3g5151 415 SMART ring_2 363 403 IPR001841 -
Lja3g5151 415 PANTHER PROTEIN, PUTATIVE-RELATED 1 412 - -
Lja3g5151 415 MobiDBLite consensus disorder prediction 1 102 - -
Lja3g5151 415 MobiDBLite consensus disorder prediction 1 18 - -
Lja3g5151 415 MobiDBLite consensus disorder prediction 64 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5151 Lja-Chr3 93842468 93847769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5151 1 410 C3H Transcription Factor Family AT1G80400 56.000 2.36e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5151 - - gmx:100819516 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5151 3 93842468 93847769 Lja3g5151 3 93842468 93847769 ECH