Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5144 ATGACATGCATTAGCAACAATATCATAGAAGGCTTGAAGCCTGTGTTTCTGATGGTGTTGATTCAATTTATTTTTGCTGGGGTTAGCATCCTGTTCAAGTTGGTTGCAAGTACTGGGATGAGTTTGACTGTTCTAATGGCCTACCGTTACTTCTTTTCATCAGCTTTCATGGTTCCTCTTGCCTACTTTGTTGAAAGGGAGAGGAAGCCAAAGATCACTATGAAAGTACTCTTTCAAGCATTTCTTTGTGGTTTATTTGGGGCGACAATACAACAAAATTTGTTTGTGGAAGGTGTGGCTTTGGCAGGTGCGACATATGCTACAGCCATGTATAATCTCATTCCTGCTGTTACCTATATCTTAGCCGTCTGTTTTGGGTTGGAAAGGTTGAACATTAAAACAAAAACCGGGAAGGCCAAGGTGCTTGGCCCTTTGGTGGGAGTTAGTGGAGCCATGATACTCACCTTCTACAGGAGCATTGAGATTCACCTCTGGCCAACCATTGTGAACCTAATGAAAAATAAGCCCAAAAATGCGGCTACCTCTCATATTTTTGGCACTTCTCTTGCTTTTGGAACTTGTCTATCGTACTCTATATGGTTGATAATTCAGGCTAGGATGAGTGCCAAGTTTCCTTGGCATTATACAAGTGCAGCTTTGATGTCAGTGATGGCATGCATTCAATCAACTATATTTGCTGTGTGCATGGAAAGAGATAATTGGAGTCGATGGAAGCTTGGCTGGAATATCAAACTTTTCACTGCAGTTTATGTGGGTGTTGTAGCTTCTGGAATACCTTGGGTTCTGACGGCGTGGGTTTTGCGCTTAAAAGGCCCACTTTATGCATCCTCTTTCAACCCTCTATTCCTCGTTATAGTGGCCATTGCAGGGTCTCTATTTTTAGATGAAAAACTCTATTTGGGAAGCGTGATAGGAGCACTACTGATTGTACTCGGGCTATACATTGTCTTGTGGGGTAAAGGTAAAGAGTTAAAGAGCAATGTTGAGCAAAAGCATAAAAATGACCCACTTGAAGAAGTTGAACCATTGGAGATAGTTACCACAAAGCAAATAAATGGTAAAAGTGCTGATGATAAAAGTGTTGATGATGGCAATGACATCAAGTGTGGTGATTCTTGA 1140 0.414 MTCISNNIIEGLKPVFLMVLIQFIFAGVSILFKLVASTGMSLTVLMAYRYFFSSAFMVPLAYFVERERKPKITMKVLFQAFLCGLFGATIQQNLFVEGVALAGATYATAMYNLIPAVTYILAVCFGLERLNIKTKTGKAKVLGPLVGVSGAMILTFYRSIEIHLWPTIVNLMKNKPKNAATSHIFGTSLAFGTCLSYSIWLIIQARMSAKFPWHYTSAALMSVMACIQSTIFAVCMERDNWSRWKLGWNIKLFTAVYVGVVASGIPWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYIVLWGKGKELKSNVEQKHKNDPLEEVEPLEIVTTKQINGKSADDKSVDDGNDIKCGDS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5144 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 151 - -
Lja3g5144 379 PANTHER WAT1-RELATED PROTEIN 13 348 - -
Lja3g5144 379 Pfam EamA-like transporter family 13 137 IPR000620 GO:0016020|GO:0016021
Lja3g5144 379 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Lja3g5144 379 PANTHER WAT1-RELATED PROTEIN 13 348 IPR030184 GO:0016021|GO:0022857
Lja3g5144 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 328 - -
Lja3g5144 379 MobiDBLite consensus disorder prediction 362 379 - -
Lja3g5144 379 MobiDBLite consensus disorder prediction 358 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5144 Lja-Chr3 93768892 93772687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5144 12 345 Nodulin-like Gene Family AT1G25270 39.826 2.00e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5144 - - aprc:113856022 505.368