Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5138 ATGGGTATGAATTCCAACAGAGTAGAGCACTTTGATTGCTGCCATGAAACCGCCATAAAAATCCAACCTGAGACACCAATGAACATCATCCACCAAGTTCGGTTGCCACCAAAGAGAACCACACTCCTCAAACTCAGACAAAGGCTGTCTGAAATCTTCTTCCCTGATGATCCACTCCACCGTTTCAAGAACCAAACTTGGTTAATGAAGTTGCTTCTAGGAATTCAATACTTCTTCCCCATTTTCCAGTGGGGTCCTCAATACAGCCTTGCACTTCTTCGCTCCGATCTCATCTCCGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAGTTATGCAAAACTTGCTAATTTGCCACCTATTATTGGACTATATTCTAGTTTTGTGCCACCATTGGTGTACTCCTTGCTAGGAAGTTCTAAGCATCTTGGTGTTGGACCTGTTTCAATTGCATCTTTGGTTATGGGATCCATGTTAAGTGAGACAGTTTCTTTCACTCAAGACCCAATTCTCTACCTGCAATTGGCTTTCACTGCCACTTTCATTGCTGGTTTATTCCAAGCTTCTCTTGGTATATTAAGGTTGGGCTTTTTAATTGATTTCCTATCAAAGGCAACGCTTGTGGGTTTCATGGCTGGTGCTGCGATCATTGTGTCACTTCAGCAGTTAAAAGGATTGCTTGGAATAGTGCACTTCACTACCAAGATGCAAATAGTTCCTGTTCTGGTCTCTGTTTACAAGGAAAAAGATGAGTGGTCATGGCAAACCATTCTTCTGGGATTTGGCTTTCTGGCCTTCTTGCTGACAACAAGACACATTAGCATGAAGAAACCAAAACTATTCTGGGTGTCAGCAGCTGCCCCTTTGACATCAGTTATTCTGTCAACCATTTTAGTCTTTCTTCTCAGACATAAGACTCATCACATTGCAGTTATTGGATACTTACCAAAGGGCCTTAATCCACCATCACCAAACATGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACAGGGATCTTATCTCTCACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTTATAAACTACCAGGTGGATGGGAACAAAGAAATGATGGCTATTGGTATTATGAACATAGCTGGTTCTTGTTCTTCATGCTATGTCACCACAGGGTCCTTTTCTCGGTCAGCTGTTAACTATAATGCTGGAGCACAGACAGCAGTTTCAAATATAATCATGGCTGCAGCAGTTCTAGTGACCCTTCTGTTTCTCATGCCTCTATTCTACTATACACCAAATGTGGTCCTAGCAGCCATTATCATCACTGCTGTGATTGGACTCATAGATTACCAAGCTGCACTTAAATTGTGGAAGGTTGACAAACTTGATTTCCTAGCATGTTTGTGTTCCTTCTTAGGGGTTCTGTTCATTTCCGTGCCTCTAGGCCTGGGTATAGCGGTTGTCATATCAGTGTTCAAGATCCTGCTTCATGTCTCTAGACCAAATACTGTGGTTTTGGGGAATATACCAGGAACACAAATATTCTACAACATAAATCAATACAAAGAAGCTTTAAGAGTTCCTTCATTTCTTATTTTGGCTGTGGAGTCTCCAATCTACTTTGCTAATTCCACTTACCTTCAAGAAAGAATACTGAGATGGGTTCGGGAAGAGGAAGAGCTTATAAAAGCAAACAATGGAGAATCATTGAAGTGCATAATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGGCTTGAAACTTTAGGTGAACTTAGAAAGATGCTGGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTACATGGCTCAAAAGTGTTGGATTCCTTTGGAGTAAAAGGAGTATATCTCACAGTGGGAGAAGCTGTGGCTGACATTTCATCATTAGAAAAAGCTCAGCCTTGA 1968 0.4167 MGMNSNRVEHFDCCHETAIKIQPETPMNIIHQVRLPPKRTTLLKLRQRLSEIFFPDDPLHRFKNQTWLMKLLLGIQYFFPIFQWGPQYSLALLRSDLISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLVYSLLGSSKHLGVGPVSIASLVMGSMLSETVSFTQDPILYLQLAFTATFIAGLFQASLGILRLGFLIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTTKMQIVPVLVSVYKEKDEWSWQTILLGFGFLAFLLTTRHISMKKPKLFWVSAAAPLTSVILSTILVFLLRHKTHHIAVIGYLPKGLNPPSPNMLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFASLINYQVDGNKEMMAIGIMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYQAALKLWKVDKLDFLACLCSFLGVLFISVPLGLGIAVVISVFKILLHVSRPNTVVLGNIPGTQIFYNINQYKEALRVPSFLILAVESPIYFANSTYLQERILRWVREEEELIKANNGESLKCIILDMTAVTAIDTSGLETLGELRKMLDKRSLQLVLANPVGNVMEKLHGSKVLDSFGVKGVYLTVGEAVADISSLEKAQP* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5138 655 PANTHER SLC26A/SULP TRANSPORTER-RELATED 22 655 - -
Lja3g5138 655 CDD STAS_SulP_like_sulfate_transporter 525 640 - -
Lja3g5138 655 Pfam Sulfate permease family 93 472 IPR011547 GO:0016021
Lja3g5138 655 PANTHER SULFATE TRANSPORTER 22 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja3g5138 655 Pfam STAS domain 525 643 IPR002645 -
Lja3g5138 655 ProSiteProfiles STAS domain profile. 524 647 IPR002645 -
Lja3g5138 655 Gene3D STAS domain 504 649 IPR036513 -
Lja3g5138 655 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Lja3g5138 655 TIGRFAM sulP: sulfate permease 80 643 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja3g5138 655 SUPERFAMILY SpoIIaa-like 530 646 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5138 Lja-Chr3 93707998 93714100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5138 1 655 Inorganic Solute Cotransporters AT3G15990 74.471 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5138 K17471 - gmx:100812617 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5138 3 93707998 93714100 Lja3g5138 3 93707998 93714100 ECH
Lja3g5138 3 93707998 93714100 Lja3g2090 3 24334651 24339696 PCT