Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5132 ATGCCAAAGAAGATTCAAAAAACCCTCCAAGATTACCTCATCAAGATCAAAAACCCACACTCTCAAATCCAATCCTTATCCTCCCCGAAGAAATGGGCTCTCTCTGGCTGCAAGCATCCTAAGACACCATCATTTGCCATCTACGGCGACCAAAGCAATAATCACAATCACAATCACAATCACAATCAGAAAGATGATGCAGCCACCCTAGCAGACGTTGATCGCTTCCTCTTTGAGAATTTCAGGTCTCTGTACCTCACAGATGATGATGAAACAGAGCAAAACAGAGCAAAAACAGAGCAAAACAGAGTAAAAACAGAGGAAAACAGAGCAAAACAGAACAAAAGTGAAGATGAAGAAGAAGCTCCAACATTAGCCTCGTTCTTGTTTGAGTCACCGAGATTCATTGACCCGCCACCGGATCTTTGCGGGTCGGCACGATTCTTCGTTAAGCCAGGGAATTCAGGGTCGCTGGTGGAGGATGCTCTGTCTCTGACAACAACAAGCGATGAAGCAGGGTCAGGTTCACTCACCACTGTGAACGATTCTTCATCATCTTCGAACTCACCCCATGATTCAAAGGGCACTGCTTCTCTTCCTGATAACTGTGTGGCCTTATTGACATACTCTCGGAGTCCTTACGAAGAGTTCCGGCGTTCCATGGAGGAGATGGTGGAAGCGAGGAGCAGAGACAACCGTGAAGGGGTGGCGGTGGTTGACTGGGATTTCATGCAGGAGCTGTTGTTCTGCTACCTGAACCTGAATGAGAAGAAGACACACAAGTTCATTCTCAGCGCTTTCGTTGATCTCGTCGCCGACATGCGGCGGAGTTCGGAGACTGCAGCGGCGGCTCCGGCGAAGCCACGCAGCGTTCGAACTGTTAGGATTGGTGGGGAGGGGAGGAAGAAGGCCAATGGGGTAATGTTGGGTTTTGGTTCCTCCTAA 945 0.4889 MPKKIQKTLQDYLIKIKNPHSQIQSLSSPKKWALSGCKHPKTPSFAIYGDQSNNHNHNHNHNQKDDAATLADVDRFLFENFRSLYLTDDDETEQNRAKTEQNRVKTEENRAKQNKSEDEEEAPTLASFLFESPRFIDPPPDLCGSARFFVKPGNSGSLVEDALSLTTTSDEAGSGSLTTVNDSSSSSNSPHDSKGTASLPDNCVALLTYSRSPYEEFRRSMEEMVEARSRDNREGVAVVDWDFMQELLFCYLNLNEKKTHKFILSAFVDLVADMRRSSETAAAAPAKPRSVRTVRIGGEGRKKANGVMLGFGSS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5132 314 MobiDBLite consensus disorder prediction 168 196 - -
Lja3g5132 314 Pfam Transcriptional repressor, ovate 210 273 IPR006458 -
Lja3g5132 314 PANTHER TRANSCRIPTION REPRESSOR OFP14 3 287 - -
Lja3g5132 314 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 287 IPR038933 GO:0045892
Lja3g5132 314 MobiDBLite consensus disorder prediction 90 123 - -
Lja3g5132 314 MobiDBLite consensus disorder prediction 90 122 - -
Lja3g5132 314 MobiDBLite consensus disorder prediction 168 199 - -
Lja3g5132 314 Coils Coil 89 117 - -
Lja3g5132 314 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 204 273 IPR006458 -
Lja3g5132 314 ProSiteProfiles OVATE domain profile. 206 273 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5132 Lja-Chr3 93664032 93664999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja3g5132 Ovate 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5132 - - lja:Lj3g3v0160750.1 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5132 3 93664032 93664999 Lja3g5132 3 93664032 93664999 ECH
Lja3g5132 3 93664032 93664999 Lja3g2086 3 24233145 24234407 PCT