Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5123 ATGAGAGAAAAAGAGAGCAAGAATAAGGTCAGAAGAATTCTCCTTCTCCCTCTATTACTATACCTCATCATCATCCTACTTCACCCCTTTGAAGCTGAGGACATTGGAAACCTTACAGAAACATGTGCAACAGGGAAATACTCCTATGTCATGATAGCTTTTCTTTCCACCTTTGGGAATGGTCAGACCCCTCAAATCAACCTGAATGGTCATGGTCAGTGTGAGAATGGCTGCACTAAGATGGGGATAAAAATCAGGAACTGTCAAAAGCAAGGGATCAAGGTGATGTTCTCCATAGGAGGAGGATCTATGAACTATTCTCTAGGTTCCATTGATGATGCTATAAATGTGTCAAGCTACTTGTGGAACAATTTCCTCGGTGGCTCCTCCTTGTCACGCCCGTTTGGGGATACAGTATTAGATAACCTTGCACGTCACCTCAAGTTACACACATCAACACAACAGACTGTGTACTTATCTGCAGCACCTAATTGCCCATTTCCTGATCCTTCACTAGGTCCAGCCCTTGATGGTGGCCTTTTTGACTATGTATGGGTACTATTCTACAAAGATCCTGCATGCAGTTTTAACCGAGGAAATTATGGTAAACTTATGACTATATGGAACCAATGGACCACGTTATCAAAAGGAGCGAAAATATTTCTGGGCTTGCTACCATTTCCAATTTCAAATTCAATTGATTATGTTCCACTTGATGTATTGGTATCTGAGATCTTACCTGTAATAAAGAAGTCACCAAATTATGGAGGGGTAATGTTGTGGTTAAGGTACTTTGATAAAATGAGTGGATACAGTGACTATATCAAAAAAGACACTGTATGTACACAACAAAGCCTTTCCACATGCAAGAGCCATGACAGTGGCTTTGTGGAACGTTTTGGTTACATGTCCAGACCTGGTATCAAGGTTTCTGAGGGTGAGAACATTGATGAACAGTGCTGTGAGATCATATGCAGGAACAATTGTTCCTGTGAAGCGTGGTGGAGATGGCTCATCATTGGGGTGGGAGCAGCAGCCACTGCAATACCTGAGATCTTCTATTTATGTAGAGTCTGTTTGAGAAGATACAAAGCAGAAGTGGATAGAAAAATGATGCAGAAGGAGCTAATACATGAGATTGAAGGAAATGCCATGCTTTCTATTATGGTTTATGGCAAAATCGGAAAAAGCAAGAACAGGGAAAAGATAAGCAATGAGGTCCAAATATTCACTTTTGAAAGCATAGCTGCTGCCACAACCAATTTTTCAGCTGCTAATAAGCTAGGGAGAGGGTGGTTATGGTCCTATGGGCAAGAGGTAGCAATAAAGCGACTCTCTAAAAGTTCAGGACAAGGGCAGATAGAGTTTAAGAGTGAAGCTAAACTCATGTCCAAACTCCAACATACTAATCTTGTAAAGCTTTTGGGATTTTGCATTGAGATAGATGAAAGAATATTAGTCTGTGAGTACATGTCTAACAAGAGCTTAGACTACTACCTATTTGATTCAAATCGTAAGAATTTGCTAGGCTGGGAGAAACGCTTGAACATCATTGAAGGCAGTGCACAAGGACTTCTTTATCTTCACAGGTATTCAAGAGTGAAGGTGATACATTGTGACCTGAAAGCAAGCAATGTATTACTCGACGAAGACATGAATCCTAAAATATCTGACTTTGGCATGGCTCGAATACTTGGTTTAAAAGTGTCACAAGAAAAGACAAAAAGAGTTGTTGGTACATATGGTTACATGGCTCCTGAGTATGCAATAAATGGTATTGTGTCTATCAAAACAGATGTATTTAGCTTTGGTATACTACTGTTAGAGATTCTTGGTGGCAAGAAGAATAATAGTTCCTATGATTCTGATCGTCAACTCAGCCTCACAGGATATGCATGGAAGCTCTGGATTGAAGATAGAGCGCTGGAACTAGTAGAGCCTGCATTAAATGAATTGGGTTCTCAGAATGAGATTTTGAGATTTATTAATATTGGCCTCTTGAGTGTTCAAGATCAAGCAAAAGATAGACCTACAATGTTAGATATTATTTCTTTTCTATCAAATGATACAATCCAACTTCCCCAACCAAAGCAACTTGCATTCTTCATGAATGAAAAGTCAGAGCTTCCTTACAACAGGCAAGAACAGTGGCGGATCCAGGATCCGAAGTCAGGGGGTTCAAATTTTTTAAACGAGCACATTGCTAAAAATATAAGTAAAAACAACTTTAATCAAGACACACTTCTTACAATAAAGACACTGAGACACACACGCGTGTATGAGAGAGTGGGGTAA 2295 0.3983 MREKESKNKVRRILLLPLLLYLIIILLHPFEAEDIGNLTETCATGKYSYVMIAFLSTFGNGQTPQINLNGHGQCENGCTKMGIKIRNCQKQGIKVMFSIGGGSMNYSLGSIDDAINVSSYLWNNFLGGSSLSRPFGDTVLDNLARHLKLHTSTQQTVYLSAAPNCPFPDPSLGPALDGGLFDYVWVLFYKDPACSFNRGNYGKLMTIWNQWTTLSKGAKIFLGLLPFPISNSIDYVPLDVLVSEILPVIKKSPNYGGVMLWLRYFDKMSGYSDYIKKDTVCTQQSLSTCKSHDSGFVERFGYMSRPGIKVSEGENIDEQCCEIICRNNCSCEAWWRWLIIGVGAAATAIPEIFYLCRVCLRRYKAEVDRKMMQKELIHEIEGNAMLSIMVYGKIGKSKNREKISNEVQIFTFESIAAATTNFSAANKLGRGWLWSYGQEVAIKRLSKSSGQGQIEFKSEAKLMSKLQHTNLVKLLGFCIEIDERILVCEYMSNKSLDYYLFDSNRKNLLGWEKRLNIIEGSAQGLLYLHRYSRVKVIHCDLKASNVLLDEDMNPKISDFGMARILGLKVSQEKTKRVVGTYGYMAPEYAINGIVSIKTDVFSFGILLLEILGGKKNNSSYDSDRQLSLTGYAWKLWIEDRALELVEPALNELGSQNEILRFINIGLLSVQDQAKDRPTMLDIISFLSNDTIQLPQPKQLAFFMNEKSELPYNRQEQWRIQDPKSGGSNFLNEHIAKNISKNNFNQDTLLTIKTLRHTRVYERVG* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5123 764 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 296 702 - -
Lja3g5123 764 Gene3D Phosphorylase Kinase; domain 1 396 490 - -
Lja3g5123 764 PANTHER OS01G0783800 PROTEIN 296 702 - -
Lja3g5123 764 ProSiteProfiles Protein kinase domain profile. 380 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5123 764 SMART serkin_6 422 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5123 764 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 21 282 IPR001223 GO:0005975
Lja3g5123 764 SUPERFAMILY Protein kinase-like (PK-like) 404 711 IPR011009 -
Lja3g5123 764 SUPERFAMILY (Trans)glycosidases 36 275 IPR017853 -
Lja3g5123 764 Pfam Protein tyrosine and serine/threonine kinase 438 620 IPR001245 GO:0004672|GO:0006468
Lja3g5123 764 Gene3D Glycosidases 31 279 - -
Lja3g5123 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Lja3g5123 764 Gene3D Transferase(Phosphotransferase) domain 1 491 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5123 Lja-Chr3 93599224 93602869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5123 404 751 Receptor kinase-like Gene Family AT4G05200 49.014 1.69e-106 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g5123 PK_Tyr_Ser-Thr 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5123 - - lang:109358482 880.937