Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5122 ATGGACTACTCAGCAGATAAGTTTCTTACTAGCAGTGTAGGGAGAGAGTTTATAGCTGGAGGGTTTGGAGGCACAACTGGTTTCATATCCAGTTACCCATTCGACACACTCCGCATCATACAACAGCAATCCAAAAAAGGCTCTGCCTTCAAAATCCTTAGAAATGTGATTGCTAAGGAAGGACCAACTGCTCTGTACCGTGGCATGGCTGTGCCTTTTACCTCTGTTGCCTTTCAGAATGCCATGGTTTTTCAAAGTTATACAATTTTTACAAGGGTATTCAGCCCATCTGCCTCTTCTAATGGTGCCCCACTTCCCATCAAGGATGTTGCTTTAGGAGGATTTGGCGCAGGTGCTCTCCAAAGTCTATTAATGTCTCCTGTTGAGTTAGTTAAAATTCGTCGTCAGCTTCAAACTAGCACTGGCCAATCCACCGAAACAGACAAGAGTCCTATTAGGATCGCTAAGAACATTTGGAAGAATGAAGGTCTTCGTGGCGTGTATCGAGGACTTGGCAGCACTATGCTTAGAGATGCACCTGCATATGCCTTCTACTTCTCCACATATGAATACATGAGGGAAAAGCTTCACCCTGGATGCAGAGAAAGCGGTCAAGATAGCCTGAATACTATGTACATAGCAGGGGGATTAGCTGGGATAGCGAGCTGGGTTTTCAACTACCCTGTAGATGTTATAAAGACAAGATTGCAAGTTCAGACACCTTCTTCAATGAAATACAAAGGCATTATGGATTGTGCCCTGAAAATCATTAAAGAAGAAGGTCATGTTGTGTTGTGGCGTGGTTTGGGACCTACGATTGTTAGAGCGTTTGTCGCAAATAGTGTTGTATTTCCTGCTTATGAGTTTAGTCTAAGGCTTCTTTACTTGGAAGATGAAGAGGAAACCCTTCAGGATTGCTTCGGCCCGGAGTCCGAGGAAAGCGATTACTGGTTAGATAAGAAGGAGGATCCTGAGAGTCCCAAGAAGAAAGCGCATAATACCTTGTGTCTTGTGATTGAGATTACTAGAGAGGAAAGGAAGGAACCTTGTAAGCAGTGGGAAAAGGCAATCTTTGTCAAGTAG 1083 0.4395 MDYSADKFLTSSVGREFIAGGFGGTTGFISSYPFDTLRIIQQQSKKGSAFKILRNVIAKEGPTALYRGMAVPFTSVAFQNAMVFQSYTIFTRVFSPSASSNGAPLPIKDVALGGFGAGALQSLLMSPVELVKIRRQLQTSTGQSTETDKSPIRIAKNIWKNEGLRGVYRGLGSTMLRDAPAYAFYFSTYEYMREKLHPGCRESGQDSLNTMYIAGGLAGIASWVFNYPVDVIKTRLQVQTPSSMKYKGIMDCALKIIKEEGHVVLWRGLGPTIVRAFVANSVVFPAYEFSLRLLYLEDEEETLQDCFGPESEESDYWLDKKEDPESPKKKAHNTLCLVIEITREERKEPCKQWEKAIFVK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5122 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 93 IPR018108 -
Lja3g5122 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 206 293 IPR018108 -
Lja3g5122 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 195 IPR018108 -
Lja3g5122 360 MobiDBLite consensus disorder prediction 313 330 - -
Lja3g5122 360 Gene3D Mitochondrial carrier domain 13 305 IPR023395 -
Lja3g5122 360 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 295 - -
Lja3g5122 360 Pfam Mitochondrial carrier protein 12 95 IPR018108 -
Lja3g5122 360 Pfam Mitochondrial carrier protein 212 295 IPR018108 -
Lja3g5122 360 Pfam Mitochondrial carrier protein 112 196 IPR018108 -
Lja3g5122 360 MobiDBLite consensus disorder prediction 309 330 - -
Lja3g5122 360 SUPERFAMILY Mitochondrial carrier 14 289 IPR023395 -
Lja3g5122 360 PRINTS Mitochondrial carrier protein signature 170 190 IPR002067 GO:0055085
Lja3g5122 360 PRINTS Mitochondrial carrier protein signature 109 122 IPR002067 GO:0055085
Lja3g5122 360 PRINTS Mitochondrial carrier protein signature 266 284 IPR002067 GO:0055085
Lja3g5122 360 PRINTS Mitochondrial carrier protein signature 221 239 IPR002067 GO:0055085
Lja3g5122 360 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5122 Lja-Chr3 93575590 93577979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5122 1 295 Antiporters AT1G79900 57.770 4.53e-106 311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5122 3 93575590 93577979 Lja3g5122 3 93575590 93577979 ECH