Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5120 ATGAACGGCGGTGCAGGGAGACAGGGGCTGAGATCTGGTTCAACCGCCGTGCACCACCAGCGTCAGCACTCCGATAACAACTTCCTCGACGGTGGCTCATCCACCGGCACCGCCAACAGGTGGCTCCAATCTGCTGGCCTTCAACATCTTCATTCCTCCTCCGCCAATCCCCTTCCTCCTCTTCAGGATTATAGCATGTACGGCGGCGGAGTGCATAGGAATGCGCAGAGGAGCTTCAATGGAGGAGGAACTGAGTATTACATGGAGCCGGCTACGCCTCCAGGTGCTCACCGTGCTTTGACGCAGAAGAAGAACGGCGATGATTCTTCCGGTGATTTCAGCCCTGGCTTGTTGGATCTGCATTCGTTTGACACTGAGCTTCTTCCTGAGATTCCAGCTTCCAATGCACATGATGCCAGTTTCTTGTATCAACCTAGCCGGGGTAGGAGCTTTGATGACGCAGAAACTTACATGATGAGCAAGCAGACAGCCAAAGCTCGTGCTACTGAAAATGTACTGAAAGTTTTTCCTGCAGACAAAGAGAAATCTAGTTCTGTGGCAAAGATTAAAGTTGTGGTTCGTAAAAGACCAATGAACAAGAAAGAATTAGCAAAGAATGAGGAAGACATTATAGAAACATATTCCAATTCTTTAACAGTGCATGAAACTAAACTGAAGGTTGACCTTACCCAGTATGTGGAAAAGCATGAATTTGTTTTTGATGCTGTCTTGGATGAAGAGGTTACGAATGATGAGGTGTATCGTGAAACAGTGGAGCCCATAGTTCCAATAATCTTTGAACGCACTAAGGCAACTTGCTTTGCATACGGGCAAACAGGAAGTGGAAAAACTTTCACAATGAAGCCGCTGCCACTTAAAGCATCAAGGGACATCCTAAGATTGATGCATCATACTTACAGGAACCAGGGATTTCAATTGTTTGTGAGTTTCTTTGAAATATACGGCGGGAAGCTTTTTGATCTCCTTAATGACCGAAAAAAACTTTTCATCAGGGAGGATGGGAAGCAGCAAGTTTGTATTGTGGGTTTGCAAGAGTACTGTGTATCTGATGTGGAAAGCATCAAAGAACTGATTGAGAGAGGAAATGCCACAAGAAGTACAGGCACCACTGGTGCAAATGAGGAGTCATCAAGGTCTCATGCAATACTTCAGCTTGCTATCAAGAGGTCAGTTGATGGCAATGAATCCAAACCTCCCCGTCCTGTTGGGAAGCTCTCCTTCATAGATCTTGCTGGAAGTGAACGTGGAGCAGATACAACAGATAATGACAAACAGACAAGAATAGAAGGTGCTGAAATCAATAAGAGCTTACTTGCCTTAAAGGAATGCATAAGAGCTCTTGATAATGACCAAGGACACATCCCTTTCAGAGGCAGTAAGTTGACTGAAGTTTTGAGGGATTCATTTGTCGGCAATTCCCGCACTGTTATGATATCGTGCATATCCCCAAGCTCTGGTTCATGTGAACATACTCTGAATACACTAAGATATGCTGACAGGGTAAAAAGTCTATCTAAAGGTAACAATTCGAAGAAGGATGTCTTATCTTCGACTTTCAACCTTAAAGAATCAACTACGGTTCCCTTATCTTCTGTTACTGCATCGGCCTATGAGGATTGCACAGCTGATGCATGGTCTGACGAAAATGAAGGGGGTGATTTTAGCCCCTCTGAAGAGTACTACGAGCAGGTGAAACCATCATTGAAGAAAAATGGAAAGATGGAATCATATGCTACAACTGAGGTCAAGTTGAAGAAACCCAGTGGTCAGATAAAATGGAAGGACCTCCCAAAAGCTGAACCAAAAGCAGCTAGTCCAGAGGATGATTTAAATGACCTCTTACAGGAAGAAGAGGACCTTGTAAATGCTCACCGGACACAAGTAGAGGAAACCATGAATATTGTTAGAGAGGAGATGAATCTCTTGGTTGAAGCAGATCAACCAGGAAATCAGCTGGATGGTTATGTAACAAGACTAAATGCCATTCTTTCTCAGAAGGCGGCTGGCATCTTGCAGTTGCAAACCCGTTTAGCTCATTTTCAGAAACGTTTAAAGGAGCATAATGTTTTGGTTTCATCCAATGGTTACTGA 2112 0.4422 MNGGAGRQGLRSGSTAVHHQRQHSDNNFLDGGSSTGTANRWLQSAGLQHLHSSSANPLPPLQDYSMYGGGVHRNAQRSFNGGGTEYYMEPATPPGAHRALTQKKNGDDSSGDFSPGLLDLHSFDTELLPEIPASNAHDASFLYQPSRGRSFDDAETYMMSKQTAKARATENVLKVFPADKEKSSSVAKIKVVVRKRPMNKKELAKNEEDIIETYSNSLTVHETKLKVDLTQYVEKHEFVFDAVLDEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTFTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFDLLNDRKKLFIREDGKQQVCIVGLQEYCVSDVESIKELIERGNATRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRPVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSTFNLKESTTVPLSSVTASAYEDCTADAWSDENEGGDFSPSEEYYEQVKPSLKKNGKMESYATTEVKLKKPSGQIKWKDLPKAEPKAASPEDDLNDLLQEEEDLVNAHRTQVEETMNIVREEMNLLVEADQPGNQLDGYVTRLNAILSQKAAGILQLQTRLAHFQKRLKEHNVLVSSNGY* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5120 703 MobiDBLite consensus disorder prediction 75 115 - -
Lja3g5120 703 CDD KISc_KIF2_like 188 509 - -
Lja3g5120 703 Pfam Kinesin motor domain 194 510 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 PRINTS Kinesin heavy chain signature 411 429 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 PRINTS Kinesin heavy chain signature 268 289 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 PRINTS Kinesin heavy chain signature 377 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 PRINTS Kinesin heavy chain signature 461 482 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 MobiDBLite consensus disorder prediction 1 35 - -
Lja3g5120 703 PANTHER KINESIN-LIKE PROTEIN KIN-13B 5 703 - -
Lja3g5120 703 PANTHER KINESIN-RELATED PROTEIN 6 5 703 - -
Lja3g5120 703 SMART kinesin_4 186 517 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 MobiDBLite consensus disorder prediction 7 35 - -
Lja3g5120 703 Gene3D Kinesin motor domain 160 514 IPR036961 -
Lja3g5120 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 511 IPR027417 -
Lja3g5120 703 ProSiteProfiles Kinesin motor domain profile. 188 511 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja3g5120 703 ProSitePatterns Kinesin motor domain signature. 410 421 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5120 Lja-Chr3 93560246 93565573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5120 188 511 Calmodulin-binding Proteins AT5G65930 35.030 3.27e-46 176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5120 3 93560246 93565573 Lja3g5120 3 93560246 93565573 ECH