Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5117 ATGTGGTGGCATGTAAGAGAAGGAGATAAGCTTTATGAGGAAGATTTTACCAAAGAGAACAAGGTAGTTGGTGTGTTATGGGCTAACAAGAGAGACAGTGGACTATGGTTTGCTCCTCCTGAGTGGAGAGAGTGGAAGGTGTTGGAGAAGGATGGAAGGGGTTTGTGTATGCACTGCGAGGAGTGTATGATAATGAAGGGGAAGGGAACAGGGTCCTTCGGTAAGCGCAGGAACAAGACCCACACTCTCTGTGTGAGGTGTGGCCGCCGCAGTTTCCATCTCCAGAAGAGTCGCTGCGCCGCGTGCGCTTTCCCCGCCGCACGCAAGAGGAAATATAACTGGAGTGTCAAAGCGATCCGAAGAAAGACCACCGGAACTGGCAGGATGAGGTACTTGCGTAACGTGCCTCGCCGGTTCAAGAGCGGATTCAGAGAAGGGACTGAAGCTGCACCCAGGAACAAGGGAGCAGCAGCTACTGCTTAA 483 0.5238 MWWHVREGDKLYEEDFTKENKVVGVLWANKRDSGLWFAPPEWREWKVLEKDGRGLCMHCEECMIMKGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5117 160 SUPERFAMILY Zn-binding ribosomal proteins 67 120 IPR011332 GO:0006412
Lja3g5117 160 Gene3D - 65 152 IPR011331 GO:0003735|GO:0005840|GO:0006412
Lja3g5117 160 Pfam Glycosyl hydrolase family 81 C-terminal domain 1 39 IPR040720 -
Lja3g5117 160 ProSitePatterns Ribosomal protein L37e signature. 69 88 IPR018267 GO:0003735|GO:0005840|GO:0006412
Lja3g5117 160 Hamap 50S ribosomal protein L37e [rpl37e]. 67 118 IPR001569 GO:0003735|GO:0005840|GO:0006412
Lja3g5117 160 Pfam Ribosomal protein L37e 68 118 IPR001569 GO:0003735|GO:0005840|GO:0006412
Lja3g5117 160 PANTHER 60S RIBOSOMAL PROTEIN L37-1-RELATED 63 160 - -
Lja3g5117 160 PANTHER 60S RIBOSOMAL PROTEIN L37 63 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5117 Lja-Chr3 93526160 93531286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5117 68 160 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 89.247 8.62e-58 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5117 3 93526160 93531286 Lja3g5117 3 93526160 93531286 ECH