Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5111 ATGGCAACCTCTCAAGGCTCTAGCATCCCTACCACCATGGAAGAAGGAATTCTCGTCTCCCACAAAGCTGTAATTGAAGACAACAACAACAACAACAACAACAGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGGTGCTGAAAATGAAGGAGAAGGAAGACGTGAAAGATTCAAACGGATCCAGTTCCCAGAATGTTCTTGATTTCGTGAACCTTTCCAAAGATCATTCGGGTCGTGGGTCAAAGGTGCAAGAACTTGATTTTTTCAACCCGGGGAAAAACGTGGTGGGTGCATCGTCATCTGGCTGGGCTAATAACAATGACAACAATGAAGGTAGAGATGAAAACACTGAGGAAAAAACCCTGGAGTCGAAGATTTTTTCTTGCAATTTTTGCAAGAAACAATTTTCTTCGTCACAAGCCCTAGGAGGGCATCAAAATGCCCATAGGCCTGAGCGTGCATTTGCAAAGCGTAGACAAGAGCTTCACCTTTCTGGTGCTTTTTCTCGCTCTAATTTTCCTTATTACAGTTATCCTAGCCTTTCAACATCACCTTATTATGGATCGTATAACAACATACTTGGTATTAGGAGGGATTCCATGATTCACAAGCCAACCTATTCTCACACCCCACCAAGTTTCAATTTTGCTCAAGGTCCTACTTTGTCAGACATGTTAAACATTTCTTCAATTAATCGAGAGAGGAGGGATGGTTTGAATCCAAATACTGGAATTGGGATTCTAGGAAATGGTGGTGCAATCGCAACACCTGTGAAGATAGAAGATTATGGTAGAGCACTTGCAACCACTCACCAATTTGGAGATTCTTCTGCAAATGCGGCTACAAGGCCAAACACAACCCTGGAGAAGCCAACAAACCTTGGAAAGTCAGCTCTAGCTACCAATATTGAAGAACCTTCTGGGCTTGATTTGTCACTAAAACTTTATGGTAGAGCACTTGCAACCACTCACCAATTTGGAGATTCTTCTGCAAATGCGGCTACAAGGCCAAACACAACCCTGGAGAAGCCAACAAACCTTGGAAAGTCAGCTCTAGCTACCAATATTGAAGAACCTTCTGATTCTAACGACCCTTCTGGGCTTGATTTGTCACTAAAACTTTAG 1158 0.4249 MATSQGSSIPTTMEEGILVSHKAVIEDNNNNNNNSSNSNNNNNNNNNNNNNNNNNKVLKMKEKEDVKDSNGSSSQNVLDFVNLSKDHSGRGSKVQELDFFNPGKNVVGASSSGWANNNDNNEGRDENTEEKTLESKIFSCNFCKKQFSSSQALGGHQNAHRPERAFAKRRQELHLSGAFSRSNFPYYSYPSLSTSPYYGSYNNILGIRRDSMIHKPTYSHTPPSFNFAQGPTLSDMLNISSINRERRDGLNPNTGIGILGNGGAIATPVKIEDYGRALATTHQFGDSSANAATRPNTTLEKPTNLGKSALATNIEEPSGLDLSLKLYGRALATTHQFGDSSANAATRPNTTLEKPTNLGKSALATNIEEPSDSNDPSGLDLSLKL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5111 385 MobiDBLite consensus disorder prediction 284 303 - -
Lja3g5111 385 MobiDBLite consensus disorder prediction 338 358 - -
Lja3g5111 385 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Lja3g5111 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Lja3g5111 385 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 31 326 - -
Lja3g5111 385 SUPERFAMILY beta-beta-alpha zinc fingers 135 166 IPR036236 -
Lja3g5111 385 MobiDBLite consensus disorder prediction 27 55 - -
Lja3g5111 385 MobiDBLite consensus disorder prediction 109 130 - -
Lja3g5111 385 PANTHER ZINC FINGER PROTEIN JAGGED 31 326 IPR045320 GO:0003700
Lja3g5111 385 Pfam C2H2-type zinc finger 138 162 - -
Lja3g5111 385 Gene3D Classic Zinc Finger 122 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5111 Lja-Chr3 93489333 93490490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5111 130 237 C2H2 Transcription Factor Family AT1G80730 39.516 2.23e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g5111 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5111 - - lja:Lj1g3v2534910.1 376.326