Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5109 ATGGGTGCTGACATGTCGAACAATCCACCTCCAACTTCTCAAACCAAAGACTTATTTGCCTCTCCAGCTCTTTCTCTTAGCCTTGCTGGGATTTTTCGCCATGGCGGTGCGGCGGCGGAGGCTGAGGCTGCCACTTCTCACATGGAGTTGGAGGATGGGGAGGAGGGGAGTGTTGGGATTGAGCGCCTTGAGGAGATTAGCAGTGAGACCTCAGGTCCCACAAGATCCAGATCAGAGGATGATTTTGGTGAAGGAGAAGGTGAGCACGAAGATGATGACGGTGATGGAGACAAAGATAACAAGAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACACTTGAGCAGATCAAAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGACAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAGATCAAGGCAATACAAGAGCGTCATGAAAACTCATTGTTGAAGACAGAAATTGATAAACTAAAGGAGAAAAATAAGAGCTTGAGAGAGATCATAAACAAAGCTTGCTGCCCCAATTGTGGGGTGCCCACTACAAGCAGAGATGGTGCCATGCCAACTGAAGAACAACAACTACGCATTGAAAATGCCAAACTCAAAGCTGAGGTTGAGAAACTTCGAGGAGCTTTAGAAAAATACGCACCAGGGACAACTTCCCCTTCATGTTCTTCTGGCCATCATGACCAAGAGAACAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGATAAGTCAAGGATAATGGACATTGTAAACCAAGCAATGGAGGAGCTCATAAAGATGGCCACAGCAGGGGAACCGTTATGGCTGCGTAGCTTTGAGACCGGTCGCGAAATACTTAACTATGATGAGTATGTGAAGGAGTTTGCAGCTGAAAATTCCGAGAGTACTGGGCCAAAGAGATCCATCGAAGCCTCAAGAGAGACAGGGGCTGTTTTTGTTGATCTCCCAAGGCTTGTCCAAAGTTTTCTAGATGCTAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCCAAAGCAGCAACAGTTGACATCATATGCAATGGAGAAGGATCTAACAGGAACGGTGCAGTGCAACTGATGTTTGCTGAACTACAAATGCTCACACCAATGGTGCCCACAAGAGAGGTGTATTTTGTCAGGTACTGCAAACAATTGAGTGGTGAACAATGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATCGACGCTTCCCTCGTCAAATGCAGAAAACGCCCATCCGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAAGTAATCTGGGTAGAGCACTTGGAATGCCAGAAGGGAGCAGTCCACACAATGTATCGCGCCATTGTGAACAGTGGCCTGGCCTTCGGGGCAAGGCACTGGATTGCGACATTGCAACTTCAATGCGAACGTCTTGTTTTCTTCATGGCAACTAATGTCCCCATGAAGGATTCCACTGGTGTTGCCACGTTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGGGCTTCTGCCATGCAGTCGGGGCATCAAGCTTCCACACATGGACTAAGGTTACCAGCAAAAATGGGGAAGACATAAGGATTAGTTCTAGAAAGAACTTGAACGATCCTAGTGAGCCTCTTGGGCTGATACTGTGTGCAGTTTCTTCTGTGTGGCTGCCTGTCTCTCATAATGTTCTGTTTGATTTCTTGAGGGATGAAACTCGCAGGACTGAGTGGGATATCATGTGCAGTAGCGCTTCAGTGCAGTCCATTGCAAATCTAGCCAAAGGGCAAGACCGAGGCAATGCAGTAACCATTCAAACAATAAAATCCAAAGAAAACAGCATGTGGATACTGCAAGATAGCTGCACAAATTCTTATGAGTCAATGGTGGTGTATGCTCCAGTGGACATTACTGGTATGCAGTCTGTGATGACAGGATGTGATTCAAGCAACCTTGCCATACTGCCCTCAGGATTCTCAATTGTTCCTGATGGCCTAGAGTCAAGGCCATTGGTGATTACTACAAGGAAGGAAGAAAAGAACACAGAGGGAGGATCTTTGTTTACAATAGCATTCCAGATCCTTACCAATGCTTCTCCTACAGCAAAGTTAACAGTGGAATCTGTGGACTCGGTCAACACTCTTGTATCATGTACATTGAGAAATATCAGAACAAGTTTACAGTGTGAAGATGGATAG 2283 0.4542 MGADMSNNPPPTSQTKDLFASPALSLSLAGIFRHGGAAAEAEAATSHMELEDGEEGSVGIERLEEISSETSGPTRSRSEDDFGEGEGEHEDDDGDGDKDNKKKKKRKKYHRHTLEQIKEMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIDKLKEKNKSLREIINKACCPNCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRGALEKYAPGTTSPSCSSGHHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATAGEPLWLRSFETGREILNYDEYVKEFAAENSESTGPKRSIEASRETGAVFVDLPRLVQSFLDANQWKEMFPCLISKAATVDIICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSGEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKGAVHTMYRAIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWGFCHAVGASSFHTWTKVTSKNGEDIRISSRKNLNDPSEPLGLILCAVSSVWLPVSHNVLFDFLRDETRRTEWDIMCSSASVQSIANLAKGQDRGNAVTIQTIKSKENSMWILQDSCTNSYESMVVYAPVDITGMQSVMTGCDSSNLAILPSGFSIVPDGLESRPLVITTRKEEKNTEGGSLFTIAFQILTNASPTAKLTVESVDSVNTLVSCTLRNIRTSLQCEDG* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5109 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 757 IPR042160 -
Lja3g5109 760 SUPERFAMILY Bet v1-like 268 499 - -
Lja3g5109 760 Coils Coil 162 189 - -
Lja3g5109 760 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Lja3g5109 760 Gene3D - 93 175 - -
Lja3g5109 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 17 757 - -
Lja3g5109 760 Pfam START domain 277 499 IPR002913 GO:0008289
Lja3g5109 760 MobiDBLite consensus disorder prediction 45 62 - -
Lja3g5109 760 CDD START_ArGLABRA2_like 270 498 - -
Lja3g5109 760 Gene3D - 342 496 IPR023393 -
Lja3g5109 760 SMART HOX_1 105 167 IPR001356 GO:0003677
Lja3g5109 760 CDD homeodomain 110 161 IPR001356 GO:0003677
Lja3g5109 760 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Lja3g5109 760 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Lja3g5109 760 SUPERFAMILY Bet v1-like 521 693 - -
Lja3g5109 760 SMART START_1 275 499 IPR002913 GO:0008289
Lja3g5109 760 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Lja3g5109 760 ProSiteProfiles START domain profile. 266 502 IPR002913 GO:0008289
Lja3g5109 760 MobiDBLite consensus disorder prediction 35 114 - -
Lja3g5109 760 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5109 Lja-Chr3 93467441 93474797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5109 66 759 Homeobox Transcription Factor Family AT1G79840 64.296 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g5109 START 7.8e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5109 K09338 - gmx:100808292 1288.86