Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5102 ATGTCTCCACCATTAGAGCATGACTACATAGGCTTGGGAGAGAAGCCATCAATGGTTGGAACCTCTGACAACAAGATATCTTCATCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTTCCTGGTTGTGAGTCTCCTGAGAGAAAACCTGCAGGTGCTTCTTCTGGGGTTTCCCTTTTTGGCAAAGACTTGCAAGAGAAAAAGCATGGTCCTTTGAAAAGCCCTGTGGCTGCTGTTGGAGCTAAGAGGGGCTTCTCTGATGCCATTGATGGGTCTTGTGGGAAATGGGGTTTCTCTGTGGCTGGTGGATCTGAGGTTGAGTTGGGAAAAGGTGCTGCTTTGTTTTCTCCAAGAGGGGGGAATGTTGGGAAGCCTCTTGTTGCTTTAGAGACTCAAACTAACACCACACCAGCCATCAATGAGGTTGCTATGGCTCATCAATCTGCTAAACCAGCTCAGGAGAAGAATAAGCAGGTTGATGGTACAAATGAGCATGCTAGTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTAGATCGTTTAGAAAGAACACAATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAGGGGAAGCCAGGGTTTGGTTGTCTCTATGTCAAAGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTACAAAAACTATATGGAATTTTCTTCGGCCCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAGTATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTCGGGGATGTTCCTTGGGAGATGTTCACTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGGTATGTCATCATCTTATTTTAAGCACCCATTCCTTCTGGTTTACAAGTTTCGATTCTTGTAA 1017 0.4572 MSPPLEHDYIGLGEKPSMVGTSDNKISSSSLNFKETELRLGLPGCESPERKPAGASSGVSLFGKDLQEKKHGPLKSPVAAVGAKRGFSDAIDGSCGKWGFSVAGGSEVELGKGAALFSPRGGNVGKPLVALETQTNTTPAINEVAMAHQSAKPAQEKNKQVDGTNEHASAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYKNYMEFSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLGMSSSYFKHPFLLVYKFRFL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5102 338 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g5102 338 Pfam AUX/IAA family 35 319 IPR033389 -
Lja3g5102 338 ProSiteProfiles PB1 domain profile. 210 312 IPR000270 GO:0005515
Lja3g5102 338 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 322 IPR003311 GO:0005634|GO:0006355
Lja3g5102 338 PANTHER AUXIN-RESPONSIVE PROTEIN 6 322 - -
Lja3g5102 338 SUPERFAMILY CAD & PB1 domains 210 311 - -
Lja3g5102 338 Gene3D - 207 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5102 Lja-Chr3 93361873 93365056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5102 212 315 B3 DNA Binding Superfamily AT1G19850 33.962 1.10e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja3g5102 AUX_IAA 4.5e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5102 K14484 - gmx:100806699 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5102 3 93361873 93365056 Lja3g5102 3 93361873 93365056 ECH