Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5096 ATGGCTGGCATAGCATTTGGACGGTTTGATGATTCTTTCAGTTTTGGCTCCATCAAAGCCTATATTGCTGAGTTCATCTCAACCTTGATCTTTGTTTTTGCTGGTGTTGGCTCAGCCATAGCCTATGGCAAATTGACATCAGATGCAGCTCTTGACCCTGCTGGGTTGGTGGCTGTTGCTATTTGCCATGCTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGCCATGTCAACCCAGCTGTGACATTTGGGTTGGCTCTTGGTGGCCAGATCACACTCCTCACTGGTCTCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTTGCATGCTTTCTCCTCAAGTTTGTCACAGGAGGCTTGACTTTGCCAATCCACAGTGTTGCTGCTGGAGCTGGTGAAGGAGTTGTTACAGAAATCATCATCACCTTTGGATTGGTGTACACTGTGTATGCCACTGCAGCTGACCCCAAGAAGGGATCATTGGGCACAATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCTGGTGGGTCAATGAACCCAGCACGCTCCTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTCATTGGTGGTGGCTTGGCTGGTGTTATCTACACCTATGTGTTCTTCCCCTCCCAGCATGCACCTCTGGCCAGTGATTTTTGA 741 0.4885 MAGIAFGRFDDSFSFGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAICHAFALFVAVSVGANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGSIVACFLLKFVTGGLTLPIHSVAAGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGVIYTYVFFPSQHAPLASDF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5096 246 Gene3D Glycerol uptake facilitator protein. 2 244 IPR023271 -
Lja3g5096 246 PANTHER MIP PROTEIN 1 246 - -
Lja3g5096 246 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lja3g5096 246 PANTHER AQUAPORIN-8 1 246 IPR034294 -
Lja3g5096 246 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Lja3g5096 246 TIGRFAM MIP: MIP family channel proteins 23 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 Pfam Major intrinsic protein 16 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g5096 246 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5096 Lja-Chr3 93326616 93328747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5096 1 246 Major Intrinsic Protein MIP AT3G16240 80.800 8.90e-139 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5096 K09873 - rcu:8273814 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5096 3 93326616 93328747 Lja3g5096 3 93326616 93328747 ECH