Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5093 ATGCGCAACTGGGGTAAATGGGTATCTGAAATTCGTGAGCCACGCAAGAAATCACGAATCTGGCTTGGAACTTTTGCCACCCCTGAAATGGCAGCAAGAGCACATGATGTTGCAGCTTTGAGCATCAAGGGCCACTCTGCGACCCTCAACTTCCCCAACATCGCTCACGTGCTCCCCAGACCAGTCACGTGTACTCCACGTGACATCCAAGCTGCGGCGGCAGAAGCCGCCGCCATGGTGGAGCTCGATCACACATCTCCTCTGTCTGAAACAGAGTCCTCTGTTTCTGAGCTGAGTGAGATTGTTGAACTTCCTAACATTGAAGAGATATTTGACTCAGTTGACTCGGGGACTGAGTTCATATCCACTGACTCGGGGAATGTTTGGGTGTACCCTCCAATGGGAAGTTTCTCTGACTCAGAAATGGTGGTTGAAGAGCTTGAGGGTTTTATTATAGATAGCTCTGAGTATGGCATTCCATTTTGGGACAAATGGGTGTGA 501 0.497 MRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSATLNFPNIAHVLPRPVTCTPRDIQAAAAEAAAMVELDHTSPLSETESSVSELSEIVELPNIEEIFDSVDSGTEFISTDSGNVWVYPPMGSFSDSEMVVEELEGFIIDSSEYGIPFWDKWV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5093 166 SUPERFAMILY DNA-binding domain 2 52 IPR016177 GO:0003677
Lja3g5093 166 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Lja3g5093 166 CDD AP2 1 53 IPR001471 GO:0003700|GO:0006355
Lja3g5093 166 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 146 - -
Lja3g5093 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 146 - -
Lja3g5093 166 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Lja3g5093 166 Gene3D AP2/ERF domain 1 54 IPR036955 GO:0003700|GO:0006355
Lja3g5093 166 Pfam AP2 domain 3 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5093 Lja-Chr3 93261320 93261820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5093 2 147 AP2-EREBP Transcription Factor Family AT5G25810 52.121 1.17e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g5093 AP2 7.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5093 K09286 - gmx:100784419 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5093 3 93261320 93261820 Lja3g5093 3 93261320 93261820 ECH