Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5087 ATGTCCTGCAAGGATGGTAAAGGTGGATTTGATAATGGAAAGTATGTTCGTTACACACCTGAGCAGGTTGAAGCTCTTGAGAGGCTTTATCATGATTGCCCCAAACCAAGTTCCATTCGCCGCCAGCAGCTTATTCGTGAGTGTCCTATCCTCTCCAACATTGAGCCAAAACAGATCAAAGTTTGGTTCCAGAATAGAAGATGTAGAGAGAAGCAGAGGAAAGAGGCCTCACGGCTGCAAACTGTGAATAGGAAGCTGAATGCTATGAACAAACTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCATTTGGTGTATGAAAATGGCTACTTTCGTCAACATACCCAAAATACTACGCTTGCAACCAAAGACACGAGCTGTGAATCAGCCGTTACTAGTGGTCAACGCAGTTTGGCAACCCAGCATCCCCCTAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGTATTGTTGCAATTTCTCATGGTTGCTCTGGTGTAGCAGCCAGAGCATGTGGTCTGGTGGGCCTAGAACCTACAAGGGTTGCTGAAATCCTTAAAGATAGGCCTTCCTGGTATCGTGATTGCCGAGCAGTTGATGTTTTGAATGTACTTCCCACAGCTAATGGTGGAACCATAGAGCTTCTTTATATGCAGCTATATGCGCCCACCACACTGGCACCTGCTCGGGACTTCTGGTTACTGCGCTACACATCTGGTTTAGAAGATGGAAGCCTTGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCTAGCATGCCTCCTGTGCAGCATTTTGCCAGAGCTGAGATGCTGCCCAGTGGGTACCTGATCAGACCTTGTGAAGGGGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTACTGCGTCCACTGTATGAGTCGTCAACAGTGCTGGCTCAAAAGACAACTATGGTGGCCCTACGTCATTTAAGGCAGATCTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCCGCAGCTCTTCGAGCACTTGGCCATAGACTGAGCCGGGGTTTCAACGAGGCACTCAATGGATTCACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAATTCTTGTGAATTCATCACCAGATAAGTTACTGGGTCTGAACCTTTCCTTTCCCAATGGATTTCCACCTGTCAGTAATGCAGTCTTATGTGCCAAAGCTTCTATGTTATTACAGAATGTGCCTCCAGCCATTCTACTAAGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCCTACTCAGCTGCTGCAATTAAAGTTGGTCCTTGCAGCTTATCAGGATCTCGGGTTGGAAATTATGGTGGTCAAGTTATTCTTCCTCTAGCCCACACTATCGAGCACGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAGTCGCTCATTCTCCTGAAGACCCGATGATGCCCAGAGAAGTGTTTCTTTTGCAGCTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCTTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATCCCTCTTGAATCTGGAAAGGAAGCGTCCAACCCAAATCGTACCCTTGACCTGGCATCTGCCCTTGACGTTGGCCCTGCTGGAACCAGAGCATCAAATGATTCATCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGAGCATGTAGCATCCATGGCCCGGCAATATGTTCGTAGTATCATATCATCTGTCCAAAGGGTAGCACTAGCACTCTCACCATCTCATTTAAGTTCACAAGCTGGGCTTAGGGCACCACTGGGTACACCTGAAGCGCAAACACTTGCTCGTTGGATCAGCAACAGTTATAGATGCTACTTGGGTGTTGAGCTACTTAAATCTAACAATGAGGGGAACGAATCTTTGCTCAAATCCTTATGGCATCATTCAGATGCAATCTTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCGCCAACCAGGCAGGGCTTGATATGCTGGAGACTACTTTAGTTGCTCTTCAAGATATAACATTGGAGAAAATATTTGATGATCAGGGCCGCAAGATTCTGTGCTCAGAGTTTCCTCAAATTATTCAACAGGGGTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGAGACCTATCTCATATGAAAGAGTGGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGCATTTGTTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2508 0.4621 MSCKDGKGGFDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLATQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSGLEDGSLVICERSLKNTQNGPSMPPVQHFARAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGHRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLLGLNLSFPNGFPPVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDPMMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASNPNRTLDLASALDVGPAGTRASNDSSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRAPLGTPEAQTLARWISNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDQGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFVNWSFV* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5087 835 CDD START_ArGLABRA2_like 152 367 - -
Lja3g5087 835 ProSiteProfiles START domain profile. 148 349 IPR002913 GO:0008289
Lja3g5087 835 SMART HOX_1 11 77 IPR001356 GO:0003677
Lja3g5087 835 CDD homeodomain 14 74 IPR001356 GO:0003677
Lja3g5087 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 835 IPR044830 GO:0003700
Lja3g5087 835 Pfam START domain 158 366 IPR002913 GO:0008289
Lja3g5087 835 Gene3D - 192 370 IPR023393 -
Lja3g5087 835 CDD bZIP 66 105 - -
Lja3g5087 835 Gene3D - 8 80 - -
Lja3g5087 835 SMART START_1 157 367 IPR002913 GO:0008289
Lja3g5087 835 Pfam Homeodomain 14 72 IPR001356 GO:0003677
Lja3g5087 835 Pfam MEKHLA domain 692 834 IPR013978 -
Lja3g5087 835 SUPERFAMILY Bet v1-like 157 367 - -
Lja3g5087 835 Coils Coil 69 103 - -
Lja3g5087 835 ProSiteProfiles 'Homeobox' domain profile. 9 73 IPR001356 GO:0003677
Lja3g5087 835 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 835 - -
Lja3g5087 835 SUPERFAMILY Homeodomain-like 13 76 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5087 Lja-Chr3 93219048 93226481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5087 1 787 Homeobox Transcription Factor Family AT1G52150 85.443 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g5087 START 9.6e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5087 K09338 - zju:107428556 1575.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5087 3 93219048 93226481 Lja3g5087 3 93219048 93226481 ECH
Lja3g5087 3 93219048 93226481 Lja3g2021 3 23543458 23552334 PCT