Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5078 ATGGGTCGACGGTGCTCCCACTGCAGCAAAGAGAACCACAATTCCCGAACCTGCCCCTCCCGCGGCGGTGGCGGTAGCGGTGGTGGTGGTGGCGGAGTGAAGCTTTTTGGGGTGAGGCTAACGGATGGACCGATTATCAAGAAGAGCGCTAGCATGGGGAGCCTCACCCTCTCCTCCGCTCATCACCATTATTCTTCTTCCTCTGACCCGCCTCATGAGCCCGACGAGTACTTGTCCGATGACCCTGCCCATGCTTCCACCTTCGCTAACCGCCGTGGAGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCGACTGTTCTTAATTGGTCTCCAGAAGTTGGGCAAAGGAGATTGGCGTGGGATAGCACGTAATTTTGTTGTCTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAATACTTTATCCGGCAGAGTAGTGCTACCAGGAGAAAGAGACGTTCAAGCCTTTTTGACATGGTTACAGATAGGTCTTCTGATCCACCTTCAGTGCCAGAAGAACAAGTACTACTTCCACCTTCGGAAAACTCACAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTCTCTCTCAAGTCAGAATTTGAACCCATGGAAACTACTACTGAAGAACATGTGGAGGAAGACCCCTATGAAACTCAAGAAAATGGATCGACACCAAAGACTCCTGGGTTCTTTCCAGCTTATGTGCCTGTTCCATTTTCCATTTGGCCATCAATCGCAGCTCCTTGTGAAGAAGTTAACAGAGGAGTGACATTTCATCATGAGATCTTGAAGCCAATCCCGGTCATCCCTAAGGAACCTGTCAATGTTGATGAACTTGTGGGATTGTCTCATCTGAGCATTGGGGAAACACAGGTACGTGATCGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCGGTTAGTAGTTCGGATTTAAACAGTGGCAAGAACAGCGCCATACAAGCAGTCTGA 1029 0.4898 MGRRCSHCSKENHNSRTCPSRGGGGSGGGGGGVKLFGVRLTDGPIIKKSASMGSLTLSSAHHHYSSSSDPPHEPDEYLSDDPAHASTFANRRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSSATRRKRRSSLFDMVTDRSSDPPSVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTTEEHVEEDPYETQENGSTPKTPGFFPAYVPVPFSIWPSIAAPCEEVNRGVTFHHEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVSSSDLNSGKNSAIQAV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5078 342 PANTHER TRANSCRIPTION FACTOR KUA1 1 336 - -
Lja3g5078 342 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Lja3g5078 342 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Lja3g5078 342 CDD SANT 100 145 IPR001005 -
Lja3g5078 342 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Lja3g5078 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Lja3g5078 342 Gene3D - 99 150 - -
Lja3g5078 342 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Lja3g5078 342 MobiDBLite consensus disorder prediction 322 342 - -
Lja3g5078 342 MobiDBLite consensus disorder prediction 180 207 - -
Lja3g5078 342 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Lja3g5078 342 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g5078 342 PANTHER OS01G0187900 PROTEIN 1 336 - -
Lja3g5078 342 MobiDBLite consensus disorder prediction 60 83 - -
Lja3g5078 342 SMART sant 97 147 IPR001005 -
Lja3g5078 342 MobiDBLite consensus disorder prediction 156 233 - -
Lja3g5078 342 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5078 Lja-Chr3 93108646 93112569 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g5078 Myb_DNA-binding 7.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5078 - - gmx:778036 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5078 3 93108646 93112569 Lja3g5078 3 93108646 93112569 ECH