Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5073 ATGTATCTTACACAGAAACCATGTCTGAAGTTGCTACTGCACTTCCCTATCTTTCTGCTTCACTTTTACAGCATCTATTCTTATCCCACACCCATGAACTGCACCGACTCAACCCGCGTCTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAACCAGACCTTAGCAGTGATAGAGAGCATGTTTGATGTTTTGCCTGGTGACATCACTGTTGAAGGCAATGGCTGGGGTTACACATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGGATTAAAAAATATGTTTCTAACACCACATTCACAGTGAAATCCCATGGAGGGTTTGTGACTGACATGGTGATGGATGCCTATGATGGGCTTGTTTTCTTGCCCAACACGACGACACGCTGGGCAAGAGAAGGTTCTGTGGTGCCTCTGAGCTTGTTCTGTGGCTGCTCCAGTGGACTGTGGAATTATTTGGTGAGTTATGTGATCAGAGATGGGGACAGTGTTGAATCTTTGGCAAGTAGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATCAGCAATCCTGATAGTGTCATTGTTGGCTCTCTTTACTATATACCTTTGAATTCAGTTCCTGGTGAGCCTTATCACCTGAAGAATGATACTTCTCCGGTTCCTGTTCCTTCACCATCTGTTGATAATTTTTCAGCTGATGATATCAACCGTAAAGCTCACGTACCCTATGGATTGATCATGGGAGGTATAGGGGTTGGTCTTGCACTAATAATTATAAGCATGATACTGTGTGTGTTCCTGAGATCATCAAATTGTTTAGTTGAAGCCAGAAATCAAGCAAAGGTTGCTGAGGGTAATATCTCTCATAAGCTCCATAGGAGTCCAATTTTGTTTTGTGGGCCTGGAAGATTCATATGCTGCAAACCTGTAGACCAAACTGATGGTGAATCCAGCAGTGACCAAATTACTGCTCCTAAACCTTCAACTCTAATGCCAGAAGTTTTTAACATGGATAAGCCAGTAGTTTTTACATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCAGATTCAAATCTTCTTGGCTACAAAACATATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCCATTAAGAGAATAACAGCTACTAAAACCAAAGAATTTATGTCAGAGATGAAAGTTCTGTGCAAGGTCCATCATGCTAATCTGGTAGAATTCATCGGCTATGCGCCTAGTCATGATGAGGTTTTCCTTGTTTTTGAATATGCTCAGAAAGGTTCACTCAGTAGCCATTTGCATGATCCTCAGAATAAGGGTCATTCATCACTTTCTTGGATCACAAGGGTTCAAATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACAAAAACTCGTTACGTCCATCAAGATATCAATACAAGCAACATTCTTCTTGATGCTTCCTTCAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTTAGTGAAACAATTGAGGGAGGAACCACAACAACCAAAGGTGTTAGTACATATGGATATCTTGCTCCTGAGTATGTCCCTTTTGCATTTACAAAACCATTACTTATATACAGAAAGAGAAAAATATGA 1626 0.4121 MYLTQKPCLKLLLHFPIFLLHFYSIYSYPTPMNCTDSTRVCTSFLAFKPQPNQTLAVIESMFDVLPGDITVEGNGWGYTFIRKNCSCAAGIKKYVSNTTFTVKSHGGFVTDMVMDAYDGLVFLPNTTTRWAREGSVVPLSLFCGCSSGLWNYLVSYVIRDGDSVESLASRFGVSMDSIETVNGISNPDSVIVGSLYYIPLNSVPGEPYHLKNDTSPVPVPSPSVDNFSADDINRKAHVPYGLIMGGIGVGLALIIISMILCVFLRSSNCLVEARNQAKVAEGNISHKLHRSPILFCGPGRFICCKPVDQTDGESSSDQITAPKPSTLMPEVFNMDKPVVFTYEEIFSSTDGFSDSNLLGYKTYGSVYYGLLRDQEVAIKRITATKTKEFMSEMKVLCKVHHANLVEFIGYAPSHDEVFLVFEYAQKGSLSSHLHDPQNKGHSSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDINTSNILLDASFRAKISDFGLAKLVSETIEGGTTTTKGVSTYGYLAPEYVPFAFTKPLLIYRKRKI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5073 541 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Lja3g5073 541 SUPERFAMILY LysM domain 154 199 IPR036779 -
Lja3g5073 541 PANTHER BNAA06G02020D PROTEIN 32 525 - -
Lja3g5073 541 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 525 IPR044812 GO:0019199|GO:0045087
Lja3g5073 541 Pfam LysM domain 156 193 IPR018392 -
Lja3g5073 541 Gene3D Phosphorylase Kinase; domain 1 326 423 - -
Lja3g5073 541 SUPERFAMILY Protein kinase-like (PK-like) 327 528 IPR011009 -
Lja3g5073 541 Pfam Protein tyrosine and serine/threonine kinase 357 525 IPR001245 GO:0004672|GO:0006468
Lja3g5073 541 ProSiteProfiles Protein kinase domain profile. 352 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5073 541 SMART LysM_2 155 199 IPR018392 -
Lja3g5073 541 CDD LysM 154 198 IPR018392 -
Lja3g5073 541 Gene3D Transferase(Phosphotransferase) domain 1 425 531 - -
Lja3g5073 541 Gene3D LysM domain 151 205 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5073 Lja-Chr3 92998809 93002526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5073 31 525 Receptor kinase-like Gene Family AT1G51940 58.824 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja3g5073 PK_Tyr_Ser-Thr 6.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5073 - - gmx:100789067 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5073 3 92998809 93002526 Lja3g5073 3 92998809 93002526 ECH
Lja3g5073 3 92998809 93002526 Lja3g2004 3 23205689 23213873 PCT