Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5072 ATGGATGAAAGGTCAAGGAATGAGGTTTCTCCTCAGCTGCTGGATTTGATTCCAAATGAGAGAGAGTGGCACATGAAAAAAGGTGAAGGAGGAAAGTCCTCAGAGGAGAGGAAGCTGGAGCTGAGGCTTGGTCCACCTGGTGTTGAGGACTGGTCCCTCAATGACAAAATGAAAAACACTCAAACAGATCATGAGTCTCTACTCTCTCTTGGTTACTACTATCCCATGATGCCTCATTCAGCAAAACTAAGCTCCAACAATGGTTTCCATAGCTACCAACACCACCACCAGGGTAGTAAAGCTACTTCATTTCTTCATCATACATCATCACAAACCTGTGGCCCTAAGGTGGTAGAGTTGCAGCAGAACAAGGGTAGTGATAATAACAACAAAGTGTTCTCTTCTCCCTCTTCTGCAAACACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCCCCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAATCTTGCTAGTAGCAGCACTTCTTCTAAGCCTCCTCCTCATGAGTCCCAGAACCAGCATGATAAAGGTGATGGTAAAAAACCTGTTAACAACTATGGTAAAGGCATGTTTGTGAAGATCAACATGGATGGTGTTCCAATTGGGAGAAAAGTGGACCTCAATGCCTATGGCAGCTATGAAAGTCTCTCCTCTGCCGTGGATGCGCTCTTTAGAGGTCTCCTTGCAGCTCAACGAGATGCCTCTGCTGGTGGAGTTCACAACAAGCCAGAGGAAGAGAAAGCAATTACAGGTTTATTGGATGGTAGTGGAGAGTATACTCTAGTTTATGAAGATAACGAAGGAGACAGGATGCTTGTTGGTGATGTACCGTGGCACATGTTTGTATCAACAGTGAAGAGGCTGCGAGTTTTGAAGAGTTCTGAGCTTTCTGCCTTTACCTCTGGCAATAAGCAACACCACACCACTTGA 969 0.4561 MDERSRNEVSPQLLDLIPNEREWHMKKGEGGKSSEERKLELRLGPPGVEDWSLNDKMKNTQTDHESLLSLGYYYPMMPHSAKLSSNNGFHSYQHHHQGSKATSFLHHTSSQTCGPKVVELQQNKGSDNNNKVFSSPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSTSSKPPPHESQNQHDKGDGKKPVNNYGKGMFVKINMDGVPIGRKVDLNAYGSYESLSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTSGNKQHHTT* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5072 322 MobiDBLite consensus disorder prediction 121 199 - -
Lja3g5072 322 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 319 IPR003311 GO:0005634|GO:0006355
Lja3g5072 322 ProSiteProfiles PB1 domain profile. 202 306 IPR000270 GO:0005515
Lja3g5072 322 MobiDBLite consensus disorder prediction 19 44 - -
Lja3g5072 322 Gene3D - 197 318 - -
Lja3g5072 322 MobiDBLite consensus disorder prediction 166 181 - -
Lja3g5072 322 MobiDBLite consensus disorder prediction 1 54 - -
Lja3g5072 322 Pfam AUX/IAA family 39 311 IPR033389 -
Lja3g5072 322 SUPERFAMILY CAD & PB1 domains 197 303 - -
Lja3g5072 322 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 319 - -
Lja3g5072 322 MobiDBLite consensus disorder prediction 121 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5072 Lja-Chr3 92974097 92978813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5072 206 317 B3 DNA Binding Superfamily AT4G23980 34.821 3.65e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja3g5072 AUX_IAA 1.1e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5072 K14484 - gmx:100804593 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2002 3 23173234 23177002 Lja3g5072 3 92974097 92978813 ECH
Lja3g5072 3 92974097 92978813 Lja3g5072 3 92974097 92978813 ECH
Lja3g5072 3 92974097 92978813 Lja3g2002 3 23173234 23177002 PCT