Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5071 ATGGGCAAAGCTACAAGGTGGTTAAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGAGCACTGTGACAAGCCTGGATCATTGGCTTTGGAGAAGAAACGGTCAAGGAAGGATGATGTGAGACACAGCAATGTTGTGGCATATGATAATGCTTGGCTCAGAACCTATGAGAAAGAGGTTGAAAAGAACAAACAAGCCACTCTTGTGAAGTCATTTAGCCATGGCAGATGCACATTGTCTAGTGGAAGCAGGGAGAGATGGTGGGCTGCTTTGAAGATCCAATCTTTCTTCAAAGGTTATTTGGCACGAAAGGCTCTTCGAGCACTCAAAGGATTGGTCAAGTTACAAGCTCTTGTAAGAGGGTATCTAGTTAGAAAAAGAGTTGCTGAAACTCTTCACAGCATGCAAGCTCTGATAAGAGCTCAATCTGTTGTTCGATCACAGAGAGCTCGCCGTTCCATGAACAAGGAGAACATGTTTCAACCACAAATTCCTGCAAGAAAATGTTTGGCACGCTTTGATGAAACAAGAAATGAGTTACATGGTAGAAGGGTTGCTCATAGGCCCAAAATTGTTCTGGTGGACACTCCGCACAATCACAGGTCTTCTTCAAGATCTAGGTGCATTGCCACTACAATGTCTGAATGTGGAGAAGACTTGCATTCTCAAACAATATCATCATCCTCTCTTCCTGTTCCGGGTCGAATCTCAGTTAATGGATGCCAACATCTTCAAGATTTTGAGTGGTGCTTCAATGTCGGTGAACATAAATTCTCCACTGCTCAGAACACACCTCGTTTAGCAAATTGTGTGATGCTATATAATGCCCCAGCTTCTCCTATGAAGAGTGTTTGTGGAGATTGCTCCAATTTCCCAAGCTACATGGCCAATACTCAATCATCTAAGGCAAAACTAAGGTCTCATAGTGCTCCAAAGCAAAGGCCTGACCCCAAGAAAAGGCTTCCATTCAATGAAATTATGGCCACAAGGAATAGCACAAGTGATGTTAGAATGCAGTGGTCATCATCATCCAATCCACAAGCAAAAGAATGTTATTGTTTTAACAAGGTTATTTAA 1074 0.4283 MGKATRWLKGLLGMKKEKEHCDKPGSLALEKKRSRKDDVRHSNVVAYDNAWLRTYEKEVEKNKQATLVKSFSHGRCTLSSGSRERWWAALKIQSFFKGYLARKALRALKGLVKLQALVRGYLVRKRVAETLHSMQALIRAQSVVRSQRARRSMNKENMFQPQIPARKCLARFDETRNELHGRRVAHRPKIVLVDTPHNHRSSSRSRCIATTMSECGEDLHSQTISSSSLPVPGRISVNGCQHLQDFEWCFNVGEHKFSTAQNTPRLANCVMLYNAPASPMKSVCGDCSNFPSYMANTQSSKAKLRSHSAPKQRPDPKKRLPFNEIMATRNSTSDVRMQWSSSSNPQAKECYCFNKVI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5071 357 ProSiteProfiles IQ motif profile. 109 136 IPR000048 GO:0005515
Lja3g5071 357 ProSiteProfiles IQ motif profile. 88 113 IPR000048 GO:0005515
Lja3g5071 357 SMART iq_5 84 106 IPR000048 GO:0005515
Lja3g5071 357 SMART iq_5 107 128 IPR000048 GO:0005515
Lja3g5071 357 MobiDBLite consensus disorder prediction 299 319 - -
Lja3g5071 357 Pfam IQ calmodulin-binding motif 88 106 IPR000048 GO:0005515
Lja3g5071 357 Pfam IQ calmodulin-binding motif 112 126 IPR000048 GO:0005515
Lja3g5071 357 PANTHER IQ-DOMAIN 5-RELATED 1 354 - -
Lja3g5071 357 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 354 - -
Lja3g5071 357 Pfam Protein of unknown function (DUF4005) 258 342 IPR025064 -
Lja3g5071 357 Gene3D - 87 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5071 Lja-Chr3 92950367 92952632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5071 1 337 IQD Protein Family AT3G16490 46.154 4.15e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5071 - - gmx:100782699 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5071 3 92950367 92952632 Lja3g5071 3 92950367 92952632 ECH
Lja3g5071 3 92950367 92952632 Lja3g1999 3 23134978 23137297 PCT