Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5063 ATGGATGGTCTGAGCTGGGATGCTTCACAACTTGTTGAGAACATACCAATCTTGTGGAGCACTCAGCCACAAGACCTGGATCAAATAGACTACTCCATGACCAACCCATGTTCAAGTTTTCTTAATTATCAAATGCAAGAGATGATGCAGAAGGAGCAAACAAACCATCTATATCCCATTTCTGAAAAGGTGACTTCAGAGATAATGAGTGGGATGCTAAACACAAATGTGTCACAGAGAGAAGAAGCCATGACTGTGAAATCAGGAGCTGGAACCAGTTGGGAAGAACCTTTCACATCTCAATCATGCATGTCCCTTTCAATCAGCAATTATGTGACAGATTTCAACATGGCCCACCAGCAAAAACAACAACTTATCAATGGCACACAAAACATCAATGCTAGTACTACTTGCTCTCTAGAATCATCACTTGATTGCTTGCTTTCAACCACTAATAGCAACAACACTGACACATGTGTCCAAGATGATGGCATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTGCAGTTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCTAGAAACAAAGACATGCAGTATCCTCCAGTCAATGAACTAGATGAAATCATATCTCAATGTCCCTCTGATCAACATGTCAGTCAAGGTACTAATATCATAGATTCTAATGTTCATTGCAAAAAAAGGAACAATGAGCTTATCAAAATTGCAGCAAGTGAACCCTGCTTCAGCATTACTGAAAATTGTGGCGGTTTCAAGCTTATCTCAGAGAATCCACCACAATCCAAGAAACCCAGATTTGATAAGTGTCCTGGCTCATCAAACATAAATTTTCAGCAGCCAAATTCTAATTCTGTGTCACATTCCATTGAAGAACCTGATCCAGAGGCCTTAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGAATTTGGCTGAGGAAGTGGTGGAAATGCCTAAAAGGAAGAATGTGAGAGTATCAACTGATCCACAAACTGTGGCTGCAAGGCAGAGGAGGGAGAGAATAAGTGAGAGGATTAGGGCTTTGCAGAAGATTGTGCCTGGTGGGAGCAAGATGGACACTGCATCGATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCTCAAGTCAAAGCATTAGAGAATCTAGGGAATAAGCTTGACTCAATGAAGTGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACCCATTTCCCTGTCCAAAACCCTAGAGGCCACATCCAATAG 1305 0.4161 MDGLSWDASQLVENIPILWSTQPQDLDQIDYSMTNPCSSFLNYQMQEMMQKEQTNHLYPISEKVTSEIMSGMLNTNVSQREEAMTVKSGAGTSWEEPFTSQSCMSLSISNYVTDFNMAHQQKQQLINGTQNINASTTCSLESSLDCLLSTTNSNNTDTCVQDDGISMILSDCRNLWNFSAVSSGESESNASNARNKDMQYPPVNELDEIISQCPSDQHVSQGTNIIDSNVHCKKRNNELIKIAASEPCFSITENCGGFKLISENPPQSKKPRFDKCPGSSNINFQQPNSNSVSHSIEEPDPEALAQMKEMIYRAAAFRPVNLAEEVVEMPKRKNVRVSTDPQTVAARQRRERISERIRALQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDSMKCPPTSIAFSFNPSFPMQTHFPVQNPRGHIQ* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5063 434 Pfam Helix-loop-helix DNA-binding domain 347 386 IPR011598 GO:0046983
Lja3g5063 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 400 IPR036638 GO:0046983
Lja3g5063 434 PANTHER TRANSCRIPTION FACTOR BHLH87 1 430 - -
Lja3g5063 434 Coils Coil 376 396 - -
Lja3g5063 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Lja3g5063 434 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 430 IPR045843 GO:0003700|GO:0006355
Lja3g5063 434 SMART finulus 343 392 IPR011598 GO:0046983
Lja3g5063 434 Gene3D - 342 405 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5063 Lja-Chr3 92821184 92822488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5063 62 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.316 1.55e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g5063 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5063 - - gmx:100793830 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5063 3 92821184 92822488 Lja3g5063 3 92821184 92822488 ECH
Lja3g5063 3 92821184 92822488 Lja3g1459 3 15421339 15422625 PCT