Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5059 ATGGGAAATCTAACTGATGTTGGAAGTGTGGAAGTGTATGAGAGAAATGGCAAGATGATAAAGAAAAGGGTTATTGAGTTAGAAGACTCTGGGTTTAAAATCAATTGTACTTTATGGGGGCACTATGTTGATGAGTTGAATTCATTTCTTGCTTCTGGTGATGCTAAGAAAGTTGTAGTGGTCATTTTTTCAGCCAAGATGAAGGAATTTCAAGGAAAAATGAACCTTCAAAATGATATCAATTCAACTAGGATTGTTTTCAACCCAGATTTCACTGATGATGTCAACTTGAAGAAGAGGGCTAATGGATTGGAGGTTGGCAATGCTATCATGCAGAGGAACGCCATGTTTTTTCAGTTTGTTTTGCTTTCTATTTTGGGTCACTATGTTGCTAAGTAG 399 0.3684 MGNLTDVGSVEVYERNGKMIKKRVIELEDSGFKINCTLWGHYVDELNSFLASGDAKKVVVVIFSAKMKEFQGKMNLQNDINSTRIVFNPDFTDDVNLKKRANGLEVGNAIMQRNAMFFQFVLLSILGHYVAK* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5059 132 CDD RPA1_DBD_B_like 1 93 - -
Lja3g5059 132 Pfam Replication protein A OB domain 11 85 IPR031657 -
Lja3g5059 132 SUPERFAMILY Nucleic acid-binding proteins 2 101 IPR012340 -
Lja3g5059 132 Gene3D - 1 106 IPR012340 -
Lja3g5059 132 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 11 97 - -
Lja3g5059 132 PANTHER REPLICATION FACTOR A 1, RFA1 11 97 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5059 Lja-Chr3 92780547 92782745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5059 1 98 Core DNA Replication Machinery Family AT2G06510 31.731 1.88e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5059 - K07466 mtr:MTR_2g054710 101.293