Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5058 ATGGCTGCAATTCCTGGACAACTCGTGTGGGAGATCGTGAAGAGGAACAACTCTTTTCTGGTGAAGGAGTTTGGCAATGGTACTCAGAGTGTTCAGTTCAGCAGAGAGCCTAACAATCTCTACAACCTCAACACCTTCAAGTACTCTGGTTTGGCCAACAAGAAGACTGTGACCATTCAGGCTGCGGGCAAAGATCAGTCTGTGTTGTTGGGAACGACCAAGTCAAAGAAGGAGACCAAGCCTGCAGCTTTGGTTCACAAGTCTGTCATGAAGAAGGAGTTTCGCAGGATGGCTAAGGCAGTGCAAAATCAGGTGGCTGATAACTACTACAGGCCTGATCTCAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTCAACAGGAGCCTCAAAGTTGCAAAGTCTGGTGTCAAGAAGAGGAACAGACAGGCTGTGAGGGTCCCTGGTAGGCAGTGA 453 0.4923 MAAIPGQLVWEIVKRNNSFLVKEFGNGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTIQAAGKDQSVLLGTTKSKKETKPAALVHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVRVPGRQ* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5058 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Lja3g5058 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 149 - -
Lja3g5058 150 Gene3D - 6 133 - -
Lja3g5058 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 149 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5058 Lja-Chr3 92747605 92750523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5058 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.028 3.60e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5058 K02903 - gmx:100500189 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1468 3 15562561 15564923 Lja3g5058 3 92747605 92750523 ECH
Lja3g5058 3 92747605 92750523 Lja3g5058 3 92747605 92750523 ECH
Lja3g5058 3 92747605 92750523 Lja3g1468 3 15562561 15564923 PCT