Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5056 ATGCAAGGCCCAACAGCATTTCAACCAATCCAACCCCAATTTCCTGAACAAGAACAGCTTAATTGCCCACGTTGTGATTCTCCAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCGCGCCATTTCTGCAAGAATTGCAAAAGGTACTGGACTAAAGGTGGTTCTCTCAGAAACATCCCTGTTGGCGGTGGAAGCAGGAAGAACACAAAAAGATCATCAACCAAATCCAAAACCTCTGCATCAGCATCAGCATCACCTTCTCCATCGCCAACAGTTTCCTCTACCTCCTCTGCAGCTCAAGCTACAGCTTCAGAGCCTGACCCGACCCGGATTTGCACCAACCCGGTTAACATTGGTGGGGGTTTCAGTTCCCCTCTTGCATCAAATGAGCATTTGGGGAACCTTTCATGGGGTGTGAATTCTAGTGGGTTGAATCTGAAAATGGGGCAGGTGGAAGGAGTAGGGGAGAATGCAAGTTCTGGTCAGCTGGTGAATCCGGGTTCGGGTCGGAGTCCCGGGTTGGAGATGCAGAGTAATAGGAATGCAGAGAGTTTTGTGAGTGTGCAAAATGGTGATTCAAGCTGCTGGAATGGTAATAATGGGTGGTCTAACCTTACAATATACACTCCTGGGTCAAGCTTTCAGTAG 660 0.4803 MQGPTAFQPIQPQFPEQEQLNCPRCDSPNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGSRKNTKRSSTKSKTSASASASPSPSPTVSSTSSAAQATASEPDPTRICTNPVNIGGGFSSPLASNEHLGNLSWGVNSSGLNLKMGQVEGVGENASSGQLVNPGSGRSPGLEMQSNRNAESFVSVQNGDSSCWNGNNGWSNLTIYTPGSSFQ* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5056 219 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 4 219 - -
Lja3g5056 219 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Lja3g5056 219 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g5056 219 MobiDBLite consensus disorder prediction 69 120 - -
Lja3g5056 219 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Lja3g5056 219 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Lja3g5056 219 MobiDBLite consensus disorder prediction 61 120 - -
Lja3g5056 219 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 219 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5056 Lja-Chr3 92722466 92724376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5056 11 155 C2C2-Dof Transcription Factor Family AT1G51700 54.902 5.13e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g5056 zf-Dof 1.2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5056 3 92722466 92724376 Lja3g5056 3 92722466 92724376 ECH
Lja3g5056 3 92722466 92724376 Lja3g1477 3 15691247 15692368 PCT