Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5048 ATGAGTCGAGAACAGAAGCGAGGGAAGCAGGAAAAAGGTTCCGATGGTGCTGAGAAGGTTATTGTTGCTGTGAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCTCTGACTCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTACCCCCACAAAGTTCAGGCAAAAAGTTATGGGGTTTTCCAAGGTTTGCTGGCGACTGTGCCAGTCTTCACAAGAAGTCGACCACGGGAACAAGTTCAGAACAGAAGAATGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCAAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCCTGTGGAGCAGTGGCTGCAGAAGCCAAGAAAGCCCAAGCCAATTGGGTTGTGTTAGACAAACATCTCAAACATGAGGAAAAACAATGCATGGAAGAGCTTCAGTGCAACATTGTGGTTATGAAACGTTCCCAACCTAAGGTACTCCGCTTGAATTTGGTGGGTTCAAAGAAGAAGGATCTTGAAGAAGCATGTCCACTACCTTCTGAGCAAAGTGGGTTGCATGGAATACACTCCAAGAAGAAGAATGGTACCCTAAATTCCATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCTGAGCTAGGAACTCCGCTAACTGCGACTGAAGCTGGCACTTCATCAGTTTCAAGCTCTGATCCAGGAGCTTCACCATTTTTTATCTCTGAGATGAATGCTGAGTCAAAGAAAGAGGAAACTATCAAAGAAAATCTAGAACTTGATGATAGTAATTCAGACACAGACAGCGAAGATTTGTCCACATCTTCAGCTAGCTTGAGATTCCAGCCATGGATTACAGAGTTACTTTTACATCAACATCAAAAATCATCTCAACGTGCTGCAGAAGAAAGATCGGAGAGATCTTGTAATAGGATTCAACTGTCTACAGCTAAAGCTTTGCGGGAGAAATTCTCAAAGCTGGATGGAGAAGCTGAGATTGAAGCCTCAATCTATAAGACTGGCTTAAATTTCGGTGGAGATGTAAGAGAAGCAGTAGCATTATCTAGGAATGCCCCACCAGGTCCACCTCCGTTATGCTCAATATGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTTGCTACTGGTGGATTTTCAAAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCCTGAATTTTGCTCAGAGGTAGAAGTCCTGAGTTGCGCTCAGCACCGAAATGTTGTTATGTTGATTGGGTTCTGTATAGAGAACAGGAGAAGGCTACTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAACGGGAACCATTAGAATGGTCTGCGCGTCAAAAAGTTGCTGCTGGAGCTGCTCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTTGGTTGTATAATCCACCGTGACATGCGGCCTAATAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGAGTGGAAACTAGAGTGATTGGAACATTTGGATATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATAACTGAAAAGGCTGATGTTTATTCGTTTGGTGTTGTATTACTGGAGCTTGTAACAGGTCGAAAAGCTATTGATCTGAATAGACCCAAGGGTCAGCAGTGTCTTACTGAGTGGGCACGTCCATTGATAGATGAATATGCTATTGAGAAATTCATTGATCCAAGATTGGGAAGTCACTACTCTGAAGATGAGGTTTCTTGCATGCTTCATGCTGCATCATTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTGCGAATACTGGAGGGTGACACTCTCATGGACACGAATTGCATTTCAACTCCTGGTTATGATGTCGGAAACCGGAGCATTTAA 2097 0.4344 MSREQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPPQSSGKKLWGFPRFAGDCASLHKKSTTGTSSEQKNDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAQANWVVLDKHLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGSKKKDLEEACPLPSEQSGLHGIHSKKKNGTLNSIKGPVVTPTSSPELGTPLTATEAGTSSVSSSDPGASPFFISEMNAESKKEETIKENLELDDSNSDTDSEDLSTSSASLRFQPWITELLLHQHQKSSQRAAEERSERSCNRIQLSTAKALREKFSKLDGEAEIEASIYKTGLNFGGDVREAVALSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSKANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDPEFCSEVEVLSCAQHRNVVMLIGFCIENRRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKVAAGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARPLIDEYAIEKFIDPRLGSHYSEDEVSCMLHAASLCIRRDPYSRPRMSQVLRILEGDTLMDTNCISTPGYDVGNRSI* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5048 698 ProSiteProfiles Protein kinase domain profile. 405 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5048 698 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lja3g5048 698 MobiDBLite consensus disorder prediction 190 284 - -
Lja3g5048 698 CDD USP_Like 19 145 - -
Lja3g5048 698 MobiDBLite consensus disorder prediction 204 248 - -
Lja3g5048 698 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Lja3g5048 698 CDD STKc_IRAK 411 677 - -
Lja3g5048 698 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 694 - -
Lja3g5048 698 Gene3D Transferase(Phosphotransferase) domain 1 481 686 - -
Lja3g5048 698 PANTHER OS01G0253100 PROTEIN 15 694 IPR045271 GO:0004714|GO:0006468
Lja3g5048 698 Gene3D HUPs 3 179 IPR014729 -
Lja3g5048 698 MobiDBLite consensus disorder prediction 255 272 - -
Lja3g5048 698 Coils Coil 251 271 - -
Lja3g5048 698 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Lja3g5048 698 SUPERFAMILY Protein kinase-like (PK-like) 389 679 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5048 Lja-Chr3 92640692 92646824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5048 364 671 Trihelix Transcription Factor Family AT1G68690 51.757 2.28e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja3g5048 PK_Tyr_Ser-Thr 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5048 - - gmx:100789216 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5048 3 92640692 92646824 Lja3g5048 3 92640692 92646824 ECH
Lja3g5048 3 92640692 92646824 Lja3g1485 3 15874913 15878968 PCT