Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5047 ATGGACATTGAAGAAGACCCTCCTCAAAACCCAGCAAAAAGGCTCAAATGCTCAGCATGCTATAAGCAGTATAAGAAGAAAGAGTCTCTGATTGAGCACATGAAAGCCTCATACCACTCTGTCCATCATCCTAGATGTGGTGTCTGTCAAAAGTATTGCAAATCATTTGAATCTCTAAGGGAACATCTTTTCGGTCCTTTGCCTAAAGGACTTTGTTCGAAGATTTTCTCTGAACAGGGTTGTCGGCTTTGCTTGACACTATTTGACAGCCCCAGGTCTCTCGGTGAGCATAGAGTGACATGTCGCCTATCTTCCCCTGGTTTTGTACCCCTAGGAATATACACAATGCCCTATATAGGCTCCCAAATTGATCATCGTGATTCGTCTAATGAAGATCACCCTGGAGCTGTTGCATTAGACTGTGAAATGGCTGGTGGTGGAAGTGATGGATCGCTAGATCTTTGTGTAAGAGTATGCTTGGTCGATGAAGATGAGAATTTACTTTACCATGCATATGTACAGCCTCCAATCCCTGTTACAAACTATAGACATGATATAACTGGGATAACAGAAGATGATCTTAGAGATGCGAGGCCCCTTAAAGAAGTTAAAGAAAAGATATTGCAAATTTTATACAATGGAGAATCCATTAGCAAAGTTAGATTGGACGGAGGAAAGGCCAGGCTTCTTGTTGGGCATGCATTAGCACATGATTTAGATTGCTTGAAAATGAACTATCCAGATCACATGTTGAGAGACACTGCAATGTACCGTCCATTGATGAAAACAAACTTTGTCAGTCATTCACTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAACTCGGCACTCATGACCCATATGAAGATAGTATTTCTGCAATGAGGCTGTATAAGAGAATGCGAGGTCAAAATCATCAGGAGAAAAACTGCGGAACATTGACTTCAAGTAATAACTTTGTCGGCATGTCTGATGGCTGGAAGTCTAAGGAACTTGACAACCTCACACCTGATGAACTCTTTGACATGTCAAAATCAGACTACAAGTGTTGGTGCTTGGATTTGAGACCAAGATTGGCAGCCTGA 1092 0.4148 MDIEEDPPQNPAKRLKCSACYKQYKKKESLIEHMKASYHSVHHPRCGVCQKYCKSFESLREHLFGPLPKGLCSKIFSEQGCRLCLTLFDSPRSLGEHRVTCRLSSPGFVPLGIYTMPYIGSQIDHRDSSNEDHPGAVALDCEMAGGGSDGSLDLCVRVCLVDEDENLLYHAYVQPPIPVTNYRHDITGITEDDLRDARPLKEVKEKILQILYNGESISKVRLDGGKARLLVGHALAHDLDCLKMNYPDHMLRDTAMYRPLMKTNFVSHSLKYLTRTYLGYDIQLGTHDPYEDSISAMRLYKRMRGQNHQEKNCGTLTSSNNFVGMSDGWKSKELDNLTPDELFDMSKSDYKCWCLDLRPRLAA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5047 363 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 359 - -
Lja3g5047 363 SMART exoiiiendus 135 309 IPR013520 -
Lja3g5047 363 Pfam Exonuclease 137 300 IPR013520 -
Lja3g5047 363 Gene3D - 133 321 IPR036397 GO:0003676
Lja3g5047 363 PANTHER EXONUCLEASE FAMILY PROTEIN 12 359 - -
Lja3g5047 363 CDD REX4_like 137 301 IPR037431 GO:0006364|GO:0008408
Lja3g5047 363 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Lja3g5047 363 SUPERFAMILY Ribonuclease H-like 137 305 IPR012337 -
Lja3g5047 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5047 Lja-Chr3 92627991 92631130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5047 1 356 C2H2 Transcription Factor Family AT3G27970 51.524 1.62e-130 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5047 K18327 - gmx:100805841 581.637