Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5045 ATGAAGGATAAGGCGATGGAGGAAAAGCCTAAGCTCATCCATGGAACAATTGAAGCTACCATTTTCAACGCCACACCTTACTCACATCGATTTCCCTTCAACTGTTTGTTGGTAAATGGAAAGCCTGCTTATGTGACCATAAAGATAGACAACAATGTGGTGGCAAAAACAACCTTAGAACGTGAACGTGTCTGGAACCAAACCTTTCAGATTCAATGTGCTCATCAAGATGATTCACCTATCACCATTACACTGAAAACACCATGCACCATATTGGGGAAGCTCCATATCCAGGCCCAGAGGTTGAATGAAGAAACCTTGATCAACGGGTTCTTCCCTCTCCTCATGGAAAATGGAAAGCCAAATCCACAACTTAAACTAAGGTTTTTGCTATGGTTCAAGCCAGCATATATGGAACCAGGTTGGGAAAAGCTAATTAGCAGTGGGGAGTTTCAAGGGCTGAGGAATGTTACATTTCCTCAAAGGTCCAATTGTGAGGTTAAACTCTATCATGATGCTCACCACTCATCTGCTTTCCAACCTCCTTTTGGTGTATGTGGAGCTCCAAGAAAGCTTTGGGAGGATGTGTATAAAGCCATTGAGGGTGCAAAATATTTGATTTACATAGCAGGCTGGTCCTTAAATCCCAAGATGGTTCTGGTTAGAGATCCTGAAACAGAAATACCTCATGCCAGAGAAATAAAGCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAGACATCCTTGCCTTTTATCATGAACAAGGGTGTGATGAAAACACACGATGAGGACACTTTTTCTTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACTACATGTTCCCAACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAAAGCACCAAACTCTGTTAATGAAAAAGAGATCATGAGCTTCTTGGGGGGTTTAGATTTGTGTGATGGCAGATATGATACAGAGAAACATTCATTGTTTCAAACACTTGATGAGGAATCACATTACCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGGCTTGGCATGATGCTCATGCTTGTGTTACAGGAGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGGTGGACAAAGCAATGTGATGCTTCTCTTTTAGTCCCAGCTAGCACCTTATTAAACCTTATCCCAATTCCCTCAAGCACCCCAAAAGAGAGGAATTGGAAAGTTCAAGTGTACAGGTCAATTGACAACGTTTCTGTTAGCAAGCTATTTAGAAAACTAACTGTGGAGAGTAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCTTGCTGACAGGTTTATATACATTGAAAACCAGTACTTCATTGGGGGATGCCATTTGTGGGAGAAAGATAGGAATAGTGGCTGCAGAAATCTGATTCCTATTGAAATTGCACTCAAGGTGGTCAATAAGATTAAGGCAAGAGAAAGGTTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGAAAATGATGTATACGTTGATTGGAGAAGCAATAAGAGAATGTGGGGAGCCAGGGCATCCAAAAGACTATTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGGGGAGTGTCTTCCACCACATCCTCCAAATCCTGAAACACAATACTGGAATGCTCAAAAGAACAGGAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGATGTATACATAATAATAGGATCAGCAAATGTGAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCCATAGGTGCCTACCAGACTCAAGATGGAGGTGATCACCTCATAAACCAGGGTGATATTCATGCATACAGGATGTCACTATGGTATGAGCACACTGGGAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGAATCAGATTAATAGGAGATCAAATGTGGGAAATATACAGCGGTGAAGAGATTGTGGACATGGAAGGTGTGCACCTTGTAACTTACCCTGTGAAAGTAACTCAAGAAGGGTCTTTGGAGGACTCAAATGATGGTGAGGGTCATTTTCCTGATACAGAATCTCTAGTGAAAGGGAAAAGATCTAAATGGTTACCTCCTATCTCGACCACTTAA 2289 0.4207 MKDKAMEEKPKLIHGTIEATIFNATPYSHRFPFNCLLVNGKPAYVTIKIDNNVVAKTTLERERVWNQTFQIQCAHQDDSPITITLKTPCTILGKLHIQAQRLNEETLINGFFPLLMENGKPNPQLKLRFLLWFKPAYMEPGWEKLISSGEFQGLRNVTFPQRSNCEVKLYHDAHHSSAFQPPFGVCGAPRKLWEDVYKAIEGAKYLIYIAGWSLNPKMVLVRDPETEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIMNKGVMKTHDEDTFSYFKHTKVICRKCPRLHYMFPTLFAHHQKTITVDTKAPNSVNEKEIMSFLGGLDLCDGRYDTEKHSLFQTLDEESHYHDFYQTNIAGASLNKGGPREAWHDAHACVTGEAAWDVLTNFEQRWTKQCDASLLVPASTLLNLIPIPSSTPKERNWKVQVYRSIDNVSVSKLFRKLTVESSIHEAYVEAIRLADRFIYIENQYFIGGCHLWEKDRNSGCRNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMKMMYTLIGEAIRECGEPGHPKDYLNFFCLANREKKEKGECLPPHPPNPETQYWNAQKNRRFMVYVHSKLMIVDDVYIIIGSANVNQRSMDGQRDTEIAIGAYQTQDGGDHLINQGDIHAYRMSLWYEHTGSAEELFLEPESLECVQRIRLIGDQMWEIYSGEEIVDMEGVHLVTYPVKVTQEGSLEDSNDGEGHFPDTESLVKGKRSKWLPPISTT* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5045 762 PANTHER PHOSPHOLIPASE D ALPHA 8 762 - -
Lja3g5045 762 PANTHER PHOSPHOLIPASE D 8 762 IPR015679 -
Lja3g5045 762 PIRSF PLD_plant 2 762 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lja3g5045 762 Pfam Phospholipase D C terminal 679 751 IPR024632 -
Lja3g5045 762 Gene3D Endonuclease Chain A 420 652 - -
Lja3g5045 762 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 42 137 IPR035892 -
Lja3g5045 762 Pfam Phospholipase D Active site motif 301 337 IPR001736 GO:0003824
Lja3g5045 762 Pfam C2 domain 43 114 IPR000008 -
Lja3g5045 762 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 607 634 IPR001736 GO:0003824
Lja3g5045 762 SUPERFAMILY Phospholipase D/nuclease 426 691 - -
Lja3g5045 762 MobiDBLite consensus disorder prediction 729 762 - -
Lja3g5045 762 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 300 337 IPR001736 GO:0003824
Lja3g5045 762 SUPERFAMILY Phospholipase D/nuclease 148 436 - -
Lja3g5045 762 Gene3D Endonuclease Chain A 183 417 - -
Lja3g5045 762 MobiDBLite consensus disorder prediction 731 750 - -
Lja3g5045 762 SMART pld_4 607 634 IPR001736 GO:0003824
Lja3g5045 762 SMART pld_4 300 337 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5045 Lja-Chr3 92615013 92618643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5045 35 762 Phospholipase D Gene Family (Wang group) AT1G55180 62.148 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5045 K01115 - gmx:100807431 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5045 3 92615013 92618643 Lja3g5045 3 92615013 92618643 ECH
Lja3g5045 3 92615013 92618643 Lja3g1971 3 22614231 22628947 PCT