Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g5040 | ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCTCTTCATACCGTGATCGAAGAAGTGATTCTGGGCTGGGTGCACCTGCTGCCTCCACCGGGTACGGTGGTTCGAGCATAAAGAATCATGACGACGGTGGTTCAGGGTCGCCCCGTAAGATAAATTTGGATGGGTTGTCGCATTTCGAGAAAAACTTCTACACTGAATCACCCTCTGTTAGGGCAATGACTGAAGCAGAGGTTGATGAGTATCGCCTGCGACGGGAAATCACAGTTGAAGGCCGAGATGTTCCCAAACCCGTCAAGACATTTAACGATGTCGGTTTTCCAGAGTATGTGTTGGAAGAAGTTAAGAAAGCTGGCTTTGTTGAACCTACACCCATTCAGTCACAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTGATAGGAATTGCAGAAACCGGTTCAGGGAAGACACTTGCGTACTTGTTGCCTGCTATTGTGCATGTTAATGCGCAGCCAATTCTAGACCCTGGCGATGGACCTATTGTGTTAGTATTGGCCCCAACACGTGAACTTGCTGTCCAAATACAACAAGAGTGTACTAAGTTTGGTGCATCGTCAAGGATTAAGAGTACGTGCATATATGGTGGGGTTCCAAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGCGTTGAAATCGTTATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCACATCATACTAACTTGCGAAGGGTCACATATCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTGTCTCACAGATTCGTCCTGACCGTCAAACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATGATCCATACAAAGTAATTATAGGTTCTGAGGATTTAAAAGCTAACCATGCTATAAAGCAATATGTTGACATAGTTCCTGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATATTGATATTCATGGATACTAAGAAAGGGTGTGATCAGATTACTAGGCAGCTTCGTATGGACGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGACTGGGTGCTCTCGGAGTTTAAATCTGGAAAGAGTCCTATAATGACGGCGACAGATGTTGCAGCTCGCGGATTAGATGTGAAGGATGTAAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCGTACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACTATACTCGAGGAAGCTGGACAGAGAGTGAGCCCTGACTTGGCAGCAATGGGACGAGGTGCACCTCCTCCACCCTCAGGAGGATTCCGAGATCGTGGGAAGGGTTATGGCAGTGGTCGCCCATGGAGCTGA | 1512 | 0.4709 | MSRYDSRSADPSSYRDRRSDSGLGAPAASTGYGGSSIKNHDDGGSGSPRKINLDGLSHFEKNFYTESPSVRAMTEAEVDEYRLRREITVEGRDVPKPVKTFNDVGFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYDPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPDLAAMGRGAPPPPSGGFRDRGKGYGSGRPWS* | 504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g5040 | 503 | Pfam | DEAD/DEAH box helicase | 123 | 294 | IPR011545 | GO:0003676|GO:0005524 | |
| Lja3g5040 | 503 | MobiDBLite | consensus disorder prediction | 473 | 503 | - | - | |
| Lja3g5040 | 503 | Pfam | Helicase conserved C-terminal domain | 330 | 439 | IPR001650 | - | |
| Lja3g5040 | 503 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Lja3g5040 | 503 | PANTHER | LD32873P | 54 | 489 | - | - | |
| Lja3g5040 | 503 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 333 | 478 | IPR001650 | - | |
| Lja3g5040 | 503 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 251 | 259 | IPR000629 | - | |
| Lja3g5040 | 503 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 99 | 127 | IPR014014 | GO:0003724 | |
| Lja3g5040 | 503 | CDD | SF2_C_DEAD | 318 | 448 | - | - | |
| Lja3g5040 | 503 | Gene3D | - | 306 | 479 | IPR027417 | - | |
| Lja3g5040 | 503 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 171 | 455 | IPR027417 | - | |
| Lja3g5040 | 503 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 130 | 305 | IPR014001 | - | |
| Lja3g5040 | 503 | SMART | helicmild6 | 358 | 439 | IPR001650 | - | |
| Lja3g5040 | 503 | SMART | ultradead3 | 118 | 321 | IPR014001 | - | |
| Lja3g5040 | 503 | Gene3D | - | 62 | 305 | IPR027417 | - | |
| Lja3g5040 | 503 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 54 | 489 | - | - | |
| Lja3g5040 | 503 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lja3g5040 | 503 | CDD | DEADc_DDX5_DDX17 | 110 | 305 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g5040 | Lja-Chr3 | 92577682 | 92582116 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g5040 | 86 | 459 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 35.200 | 8.22e-80 | 253 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g5040 | K12823 | - | gmx:100781619 | 880.552 |