Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5032 ATGGGTCTGCACCTTATTTTCCTACTGATTCAGCTACATTTAGTTACCAGTTCTCCTCCACAGCTTCATGAACATGCAGCCCCAAATCTGCACAATTCGAGAACCAGAAGCCATTCAAGTAGTGCATTCCCACCATCAAAGCCATCTTCTGCGGTTCCTGCAAGTATTGCCCTTCCACCTTCCAAGGCACCTTCTAGAGTTCCCGGAAGTACTGAGTCATTCCCAAAAGTTCCTACAAAGAAGTGGAGGCATAGTCCTGTTGGTTCTACCTCTCCAATATCGCACCACAAGCATCACCATTCCAGAACAAAGTCTAAAAATCAAACTCCTGGCCCAATCTATTCAAACCATCCTCATACTCATCATCAAGGTTCTCCAGTCTTCGAATCAAAACCTCCTTCCTCTTCACCTATGAGAATGAGAAGCGGTTTTCATGCACCTGCACCATCACCAGCAGCTCTATCAGACAACTTAAATATGCCCTCTCCTTCACCTAGAATTTCACCTCAAGGTTCACCATTGAAAAAGACAAAGACAAAGACTCCGCCGCCAGCATATGCTTTGGCTCTGCCACCTTCACCACCTAATAAAGATTGCATGTCGGTGACTTGCTCAGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTCAAACTCCGAATCAGCATTGCAATATACAAGTTTTTTCCTTTGGTTTCCGAGCTAGCCGATGAAATTGCAGCCAACGTTTTCTTGAACCGTGATCAAGTACGCATTGTGGGGGCTGATGCAGCAAGGCACCACTTAGAGAAAACAACTGTTCTCTTAAACTTGGTACCCCAAGGAGTAAAATTTGACGATACAACAGCATTTATAATATATAAAAAATTCTGGCACAGGGAGATTCTCGCTGATGCTTCGCTTTTTGGTGCCTATGAAGTACTCTATGTTCATTATCCAGGGCTTCCACCATCTCCACCTTCAACTCATTCAAATGTTTCTGGTATAGATATTGAATCATACCCTGGGGGTGGCAACAATGGAACAATTGTGAAGCCTTTAGGAGTAGATATCTCGAGGAAGAAAAAAGAAGGGACTGGTGAAAGAATGGTTATCATAATCGTGCTCGCATCTTTTACTGCGTTTGTTCTAGTTATTGGAATTGCTTGGCTTTGTCTGTTGAAATGCTGTTCCTGCGCTCTTGAACCTGAACAAATTCCAGATGTTATATTTTCATGCTCTTCAAAGCGAACAGCCTCAGGGGCTGCTAGGTCTTTTAGTTATTATGGAAGCATCCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACTATGACATATACAGGATCAGCTAAGATCTTTACTTTGAATGAAATAGAGAAAGCAACAAATAATTTCAATCCATCAAGAATATTAGGAGAAGGTGGCTTTGGTCTTGTCTACAGAGGTAGCCTATATGATGGGAGGGACGTGGCAGTAAAGATTCTCAAAAGAGATGATCACCATGGCGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCTTGCACCATAGAAATTTGGTTAAGTTGATAGGTATATGCATAGAGAGACAGACACGATGCCTAGTCTATGAGCTTGTCCCTAATGGAAGTGTGGAATCTCACTTACATGGTGCTGACAAGGAAACGGATCCACTTGATTGGGATGCCCGGATGAAGATTGCACTTGGTGCTGCTCGAGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTGATACATAGGGACTTCAAGTCCAGCAACATCTTGTTGGAATTTGACTTAACAGCCAAGGTTTCAGACTTTGGATTGGCTAGATCAGCATTGGAAGAGGGAAACAAGCACATTTCCACACATGTTATGGGCACATTTGGCTACCTAGCACCTGAATATGCAATGACTGGCCATCTTCTTGTGAAAAGTGATGTTTACAGCTATGGGGTTGTACTCCTTGAGCTCCTAACGGGAAGAAAGCCTGTGGATTTGTCACAGCCATCAGGTCAGGAAAACCTTGTTGCGTGGGCTCGTCCGCTTCTTACTAGCGAGGAGGGTCTGCAGAAGATCATAGATCCAGTCATAAAGAACAACATTGCTCTTGATACTGTGGTAAAAATTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTTACTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGCTGGTATGCAGTGAGCTTGAGGAAGCAAGTCATGTAAGATCAGTGAGTTTGAGAGAAGATGGTCTTGTCACTGATGTGGAAGCAAAATTTTCCAGTGTTCAAGGTGAGAGAGTGGACTGTGGAGTTTAA 2352 0.4384 MGLHLIFLLIQLHLVTSSPPQLHEHAAPNLHNSRTRSHSSSAFPPSKPSSAVPASIALPPSKAPSRVPGSTESFPKVPTKKWRHSPVGSTSPISHHKHHHSRTKSKNQTPGPIYSNHPHTHHQGSPVFESKPPSSSPMRMRSGFHAPAPSPAALSDNLNMPSPSPRISPQGSPLKKTKTKTPPPAYALALPPSPPNKDCMSVTCSEPLTYTPPGSPCGCVWPLQVKLRISIAIYKFFPLVSELADEIAANVFLNRDQVRIVGADAARHHLEKTTVLLNLVPQGVKFDDTTAFIIYKKFWHREILADASLFGAYEVLYVHYPGLPPSPPSTHSNVSGIDIESYPGGGNNGTIVKPLGVDISRKKKEGTGERMVIIIVLASFTAFVLVIGIAWLCLLKCCSCALEPEQIPDVIFSCSSKRTASGAARSFSYYGSIPGSRSMSFSSGTMTYTGSAKIFTLNEIEKATNNFNPSRILGEGGFGLVYRGSLYDGRDVAVKILKRDDHHGGREFLAEVEMLSRLHHRNLVKLIGICIERQTRCLVYELVPNGSVESHLHGADKETDPLDWDARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEFDLTAKVSDFGLARSALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPSGQENLVAWARPLLTSEEGLQKIIDPVIKNNIALDTVVKIAAIASMCVQPEVTQRPFMGEVVQALKLVCSELEEASHVRSVSLREDGLVTDVEAKFSSVQGERVDCGV* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5032 783 ProSiteProfiles Protein kinase domain profile. 467 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5032 783 PANTHER OS01G0750732 PROTEIN 11 772 - -
Lja3g5032 783 Gene3D Phosphorylase Kinase; domain 1 439 542 - -
Lja3g5032 783 PANTHER OS01G0750732 PROTEIN 11 772 - -
Lja3g5032 783 MobiDBLite consensus disorder prediction 21 183 - -
Lja3g5032 783 Pfam Protein tyrosine and serine/threonine kinase 471 740 IPR001245 GO:0004672|GO:0006468
Lja3g5032 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Lja3g5032 783 MobiDBLite consensus disorder prediction 155 177 - -
Lja3g5032 783 Gene3D Transferase(Phosphotransferase) domain 1 543 761 - -
Lja3g5032 783 MobiDBLite consensus disorder prediction 32 48 - -
Lja3g5032 783 MobiDBLite consensus disorder prediction 106 137 - -
Lja3g5032 783 ProSitePatterns Protein kinases ATP-binding region signature. 473 495 IPR017441 GO:0005524
Lja3g5032 783 SUPERFAMILY Protein kinase-like (PK-like) 445 740 IPR011009 -
Lja3g5032 783 CDD STKc_IRAK 473 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5032 Lja-Chr3 92504733 92510155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5032 196 772 Receptor kinase-like Gene Family AT5G56890 62.199 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lja3g5032 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5032 - - gmx:100775318 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5032 3 92504733 92510155 Lja3g1496 3 16043870 16048904 PCT