Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5028 ATGGAAAACGACAAGGACAAAACCGCCACTACTTCAGGAACTGTCAACACCCCCGCCAACAACGACAACACCGCCACTACTTCAAGAACTCTCAGCACCGCTGCCAACAACGACAACACCGCCACTACTTCAAGAACTCTCAGCACCGCTGCCAACAACGACAACACCGCCACTACTTCAAGAACTGCCAGCACCCCTGCCAACAACGACAACACCGCCACTACTTCAAGAACTCCCAGCACCGCCGCCAACAACGACAACACTACCACTACTTCAAGAACTGCCACCAACGCACGCTCTTGCGCTGCTTGCACACACCGCCGCAGAAAATGCTCCGCCGATTGCATTCTCGCACCGTATTTCCCTCAAGACCGCCGCCAACAGTTCGCCAACGCGCACAGACTCTTCGGCGTCGCCACCATTATCAAAATCATCCAGGACTTGGATCCCATAACCCGAGACGACGCCATGACAGCAATTCTGTACGAATCTGATGCTCGAGCCAGGGACCCAGTTGGGGGCTGTTCCAGGTTGATAATGATACTTCTATCTAAGATTGCGCAACACCAGCAGGAGCTGAATGTGATTCGTCAACAGCTCGCTTTACGACAAATGATGATGCCACAGCCACAACAAAATCACCCTGGTTTTCAAGAAGAAGGGAATGGTGATGATGAGAGGAATATTCCTGACCTGAATAAAGAAGATGAGAATGATGATGATGATGATGATGATGATGATGATGGTGAGAAGCATCTTCCAGACCTGAATGAAAAAGATGAGAATGATGATGATCATGATGAGAAGCATCTTCCTGACCTGAATAAAGAACCGAAATAA 840 0.4952 MENDKDKTATTSGTVNTPANNDNTATTSRTLSTAANNDNTATTSRTLSTAANNDNTATTSRTASTPANNDNTATTSRTPSTAANNDNTTTTSRTATNARSCAACTHRRRKCSADCILAPYFPQDRRQQFANAHRLFGVATIIKIIQDLDPITRDDAMTAILYESDARARDPVGGCSRLIMILLSKIAQHQQELNVIRQQLALRQMMMPQPQQNHPGFQEEGNGDDERNIPDLNKEDENDDDDDDDDDDGEKHLPDLNEKDENDDDHDEKHLPDLNKEPK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5028 279 MobiDBLite consensus disorder prediction 8 98 - -
Lja3g5028 279 MobiDBLite consensus disorder prediction 219 234 - -
Lja3g5028 279 MobiDBLite consensus disorder prediction 235 251 - -
Lja3g5028 279 Pfam Lateral organ boundaries (LOB) domain 100 197 IPR004883 -
Lja3g5028 279 ProSiteProfiles LOB domain profile. 99 200 IPR004883 -
Lja3g5028 279 MobiDBLite consensus disorder prediction 209 279 - -
Lja3g5028 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 94 244 - -
Lja3g5028 279 Coils Coil 179 199 - -
Lja3g5028 279 MobiDBLite consensus disorder prediction 1 98 - -
Lja3g5028 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 94 244 - -
Lja3g5028 279 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5028 Lja-Chr3 92462152 92464220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5028 99 202 AS2 family AT3G13850 53.846 2.18e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g5028 LOB 3.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5028 - - lja:Lj3g3v0312140.1 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5028 3 92462152 92464220 Lja3g1502 3 16087567 16089345 PCT