Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5026 ATGTCTAATTTGACTTGTGCATCTGGTGAAGCTAGTGCTAATTCCTCAGGCAACAAAACTGAAATCACTGGAACTGATTACCCTCAACAATGTTTTGCTCCACCACCATCTCAAACTCAACCACCACTCAAGAGAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCTGAAGTTGTGGCCATGTCTCCAAAGTCTCTTATGGCAACAAACAGGTTCTTATGTGAGATCTGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGGCACAATTTACCATGGAAGTTGAAGCAGAGAACTAGCAAGGAGATTAGGAGGAAAGTTTATGTGTGTCCAGAACCAACATGTGTTCACCATGACCCATCAAGAGCCTTAGGGGACTTAACAGGCATCAAGAAGCACTTTTCCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGAAGTATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAAACCTGTGGTACAAGAGAATACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGTAGTGGCAATACCCAACAACAACAACTCACTTCTTCCCTCTCCAACAACACCATCTCATCAAATGAATCTCCAAGCTCATCAAGATATCATCCATGGTGGTAATTTCTCATTGAAGAAAGAGCATCAAAGTTTAATACCCCCTTGGCTTGCCCCACCACACTCCAACATTGATCTTTCCTCCTCCTCTTCCTCATCAATCTTCTCCCAAACCCAAAATTTGAATCATCATCATCACCATGAAAACCCTAACCCTAGACTTGGTCCCACTCTTCCAGGCTACCAACCACCTGCACCACCAGCTCACATGTCAGCTACAGCATTGCTGCAGAAAGCAGCTCAGATGGGAGCAACCATGACCAAAACTGGCTCCTCTTCACAACCCATGATCAGGACCCACCACATGTCACCTTCTGCTGACTCTGCAACCAATGCCAACAATATCAACAACAACATTTCAAGTGGTAATTTTGGTAATTTGAATTTGTCCACATGTGAAGACCAGATGGTGACTATGACAACAACTACTGCTGCTGCTGCTACCACAGGTGTTTCAACATCCTTCCTTCATCATGTTATGGACTCATTCCCTTCTGGGTTTGAAGGAACTTCTTTTGAGGACACTTTTGGTCCTGGTGGGATTCTCAACTCAAACAACAAAGATATTGATTCCATCACAACAAGTGTTGTTAAAGGAGGAAATAATGAAGGATTGACAAGAGATTTCTTAGGTCTTAGACCTCTCTCTCATAGTGATATTCTCACCATTGCTAGCATGGGAAATTGCATGAACCATGATCAGCAAAACCAATCCCAAAAGCAGTGGCAAGGTTAG 1452 0.4387 MSNLTCASGEASANSSGNKTEITGTDYPQQCFAPPPSQTQPPLKRKRNLPGNPDPEAEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRRKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVVAIPNNNNSLLPSPTTPSHQMNLQAHQDIIHGGNFSLKKEHQSLIPPWLAPPHSNIDLSSSSSSSIFSQTQNLNHHHHHENPNPRLGPTLPGYQPPAPPAHMSATALLQKAAQMGATMTKTGSSSQPMIRTHHMSPSADSATNANNINNNISSGNFGNLNLSTCEDQMVTMTTTTAAAATTGVSTSFLHHVMDSFPSGFEGTSFEDTFGPGGILNSNNKDIDSITTSVVKGGNNEGLTRDFLGLRPLSHSDILTIASMGNCMNHDQQNQSQKQWQG* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5026 483 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 467 - -
Lja3g5026 483 Gene3D Classic Zinc Finger 53 119 - -
Lja3g5026 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lja3g5026 483 MobiDBLite consensus disorder prediction 1 33 - -
Lja3g5026 483 Gene3D Classic Zinc Finger 127 206 - -
Lja3g5026 483 SMART c2h2final6 149 169 IPR013087 -
Lja3g5026 483 SMART c2h2final6 73 95 IPR013087 -
Lja3g5026 483 SMART c2h2final6 114 144 IPR013087 -
Lja3g5026 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 467 - -
Lja3g5026 483 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lja3g5026 483 MobiDBLite consensus disorder prediction 317 353 - -
Lja3g5026 483 MobiDBLite consensus disorder prediction 1 54 - -
Lja3g5026 483 MobiDBLite consensus disorder prediction 262 279 - -
Lja3g5026 483 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Lja3g5026 483 MobiDBLite consensus disorder prediction 262 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5026 Lja-Chr3 92444176 92447140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5026 1 470 IDZ Gene Family AT1G55110 49.197 4.07e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g5026 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5026 K25870 - lja:Lj3g3v0323160.3 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5026 3 92444176 92447140 Lja3g1505 3 16154449 16157676 PCT