Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5022 ATGGCATCTTCATCTTCTTCTTCCCATGTTCCTAGAATCAAATATGATGTCTTTGTTAGCTTCAGAGGCACAGACATACGCTATGGTTTTCTCAGCCATTTGAAGAAGGAGCTTCGCCAGAAGCAAGTGGATGCCTTTGTAGATGACAGGCTTGAAGGGGGAGATGAAATATCACATGCACTTGTCAGAGCAATTGAAGGGTCACTCATGTCTTTGGTCATATTCTCCAAGGACTATGCTTCTTCTAAATGGTGCTTGGAGGAGCTTGTGAAAATAGTTGAGTGCATGGACACAAGTAAACAGGTTGTGATTCCTGTTTTCTATAATGTTGATCCATCTCATGTGCGGCACCAGATAGGGTCTTATGGAGAAGCCTTAGATAAACATGAAAAGAGTAAAAGAAACTTAGCCAAGGTGCAAAATTGGAGATCTGCTTTGAGTGTGGCTGCTAATCTTTCTGGATTTCATTCATCAAAATTTGGGGATGAAGTTGAGCTTATAGAAGCAATTGTCAAGTCTTTGTCATCCAAGTTGAATCTTATGTACCAAAGTGAGTTAACAGACCTTGTTGGAATTGAAGAACGGATTGCAGAGTTGGAGTCACAATTGCGCCTAGGGTCGACAATGGATGTTCTTGCCATTGGAATTTGGGGCATGGGAGGAATTGGTAAGACAACTATTGCAGCTGCAGTATATAACCGTCTTTGTTTTGAATTTGAAGGGTGTTGCTTTATGGCAAACATAAGGGAAGAATCAGAGAAACATGGAATGATTTATCTGAAGAATAAAATTCTCTCTATATTACTAAAGGAAAATGATCTACATATTGGCACACCTAATGGAGTTCCCCCTTATGTTAAGAGAAGGCTCGTTCGTAAAAAGGTTCTTCTTGTTCTTGATGATATCAGTGATTCAGAGCACCTAGAAAATTTAGTTGGAGCACTTGATTGGTTTGGATCTGGTAGCAGAATTATTGTAACAACTAGAGATAAGCAAGTGCTTGGTAAAATAGTTGACAGTATATATGAGGCAAAGGCATTAAACTCTGATGAAGCTATTAAGCTTTTCATTATGAATGCCTTCGAGCAACAAAGTTGTGTTGATATGGAGTGGAATGAGTTATCAAGAAGGGTGATTCAGTATGCTAATGGAAACCCATTAGCTTTGAAAGTTTTGGGCTCTTTTCTTTATGGTAAAAGCAAGATAGAATGGTTAAGCCAATTGCAGAAACTTAAGAAAATGCCTCACTCCAAAATCCAAAATGTGTTGAGATTGACTTATGATAGACTTGATCGAGAAGAGAAAAACATCTTTCTATACATTGCATGTTTTTTGAAAGGATATGAATTGCACCGAGTAATAGTTCTGCTTGATGCCTGTGGTTTCTCGACAATTATTGGGTTAAGAGTCCTTAAAGACAAAGCTCTCATCATTGAAGCCAAGGGCTCTGGAAGACCAATTGTATTGATGCATGACTTGATACAAGAAATGGGTTGGGAGATTGTTCGAGAAGAATGTATTGAAGACCCTGGGAAACGCAGTAGGTTATGGGATCCTAACGACATTCATCAAGTATTGGAAAATAACACAGGAACTAAAGCCATTGAAAGCATAACTCTGGATGTCTCAAAAATTGATGAGCTGTGCTTAAGTCCTCGAGTCTTTGCTGGGATGCCAAGATTAAAGTTCCTTAATTTTACCCAACCTGATGGCGCTGAGCAAATCCTACTTCTTCCCGAGGGCCTTGAATCTTTACCAACTAAGCTACGGCTTTTTAATTGGGTTAGTTATCCTTTGAAATCCTTGCCTCAGTTTTTTTGTGCAGAAAATCTTGTTGAGCTCAAAATGACTTGGAGCCGAGCGGAAAAACTTTGGGATGGGATCCAGAATCTTGAACATTTAAAGAAAATTGACCTGAGTGATTCCAAGCATTTGCTAGAGCTCCCAGATTTTTCAAAGGCTTCAAATCTTGAAGAAGTAGAACTCTATGCTTGCAGAAATTTGCTGAGTGTTCATCCGTCTATTTTGTCTCTCCACAAGCTTGTGCGTTTAAACCTATTTTACTGTGAAGCGCTTACCAGTCTTCAAAGTGAAACCCATTTAAGATCCCTTCGTGAACTTCTCCTCACTGGCTGCTCAAGACTTGTAGTGTTTTCAGTGACTTCAGAGAGTATGAAAGACCTAGCCTTAACTTCAACTGCTATCAATGAATTGCCCTCATCAATTGGGAGTCTCAGAAATCTGGAAACATTGACTCTTGATTACTGCGAAAGTCTAAGCAATCTTCCTGACAAGGTTGCGGACCTGAGATCACTCCGGGAACTTTATGTTCATGGTTGCATACAACTTGATGCATCAAATCTTCATGTCCTTTTTAATGGCTTGAGGTCTTTGGAAATTTTAAAGCTGCAACAATGTCTGAACTTGTCTGCAATTCCAGACAATATTAGCCTCCTATCTTCATTGCGCGAGTTGTTACTAGCAGGAACAGATATTGAGAGATTTCCTGCAAGCATCAAGCATCTTTGTAAGCTGGAAAAGATTGATTTGAGGGATTGCAAGAGGCTTTGCTATCTTCCAAAGCTTCCACCATCATTAAAAGAGTTATTTTGA 2613 0.3942 MASSSSSSHVPRIKYDVFVSFRGTDIRYGFLSHLKKELRQKQVDAFVDDRLEGGDEISHALVRAIEGSLMSLVIFSKDYASSKWCLEELVKIVECMDTSKQVVIPVFYNVDPSHVRHQIGSYGEALDKHEKSKRNLAKVQNWRSALSVAANLSGFHSSKFGDEVELIEAIVKSLSSKLNLMYQSELTDLVGIEERIAELESQLRLGSTMDVLAIGIWGMGGIGKTTIAAAVYNRLCFEFEGCCFMANIREESEKHGMIYLKNKILSILLKENDLHIGTPNGVPPYVKRRLVRKKVLLVLDDISDSEHLENLVGALDWFGSGSRIIVTTRDKQVLGKIVDSIYEAKALNSDEAIKLFIMNAFEQQSCVDMEWNELSRRVIQYANGNPLALKVLGSFLYGKSKIEWLSQLQKLKKMPHSKIQNVLRLTYDRLDREEKNIFLYIACFLKGYELHRVIVLLDACGFSTIIGLRVLKDKALIIEAKGSGRPIVLMHDLIQEMGWEIVREECIEDPGKRSRLWDPNDIHQVLENNTGTKAIESITLDVSKIDELCLSPRVFAGMPRLKFLNFTQPDGAEQILLLPEGLESLPTKLRLFNWVSYPLKSLPQFFCAENLVELKMTWSRAEKLWDGIQNLEHLKKIDLSDSKHLLELPDFSKASNLEEVELYACRNLLSVHPSILSLHKLVRLNLFYCEALTSLQSETHLRSLRELLLTGCSRLVVFSVTSESMKDLALTSTAINELPSSIGSLRNLETLTLDYCESLSNLPDKVADLRSLRELYVHGCIQLDASNLHVLFNGLRSLEILKLQQCLNLSAIPDNISLLSSLRELLLAGTDIERFPASIKHLCKLEKIDLRDCKRLCYLPKLPPSLKELF* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5022 870 SMART till_3 14 152 IPR000157 GO:0007165
Lja3g5022 870 Gene3D - 181 342 IPR027417 -
Lja3g5022 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 441 IPR027417 -
Lja3g5022 870 Pfam NB-ARC domain 195 417 IPR002182 GO:0043531
Lja3g5022 870 Coils Coil 182 202 - -
Lja3g5022 870 Gene3D Ribonuclease Inhibitor 722 870 IPR032675 -
Lja3g5022 870 Gene3D - 12 180 IPR035897 -
Lja3g5022 870 Gene3D Ribonuclease Inhibitor 512 721 IPR032675 -
Lja3g5022 870 SUPERFAMILY L domain-like 490 861 - -
Lja3g5022 870 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Lja3g5022 870 Pfam TIR domain 14 191 IPR000157 GO:0007165
Lja3g5022 870 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 743 IPR044974 GO:0006952
Lja3g5022 870 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 746 857 IPR044974 GO:0006952
Lja3g5022 870 PRINTS Disease resistance protein signature 289 303 - -
Lja3g5022 870 PRINTS Disease resistance protein signature 382 396 - -
Lja3g5022 870 PRINTS Disease resistance protein signature 629 645 - -
Lja3g5022 870 PRINTS Disease resistance protein signature 213 228 - -
Lja3g5022 870 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 743 - -
Lja3g5022 870 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 746 857 - -
Lja3g5022 870 ProSiteProfiles TIR domain profile. 13 178 IPR000157 GO:0007165
Lja3g5022 870 Gene3D - 346 431 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5022 Lja-Chr3 92407543 92411920 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5022 651 869 WRKY Transcription Factor Family AT4G12020 29.915 4.38e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5022 - - gmx:100799103 1380.16