Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5017 ATGTTTTCCCATAAGAGGGTTGTTGCTGCTGCAATAAAGATGCAAAAAGTTTACAGGAGTTACAGGATTAGAAGAAAGCTGGCAGATTGTGCAGTTATTTGCGAGGAGCTATGGTGGAAGGCTAAAGACTTCACTGCTTCTAATGAGTGCCTTACAACACATGTTGACTCTGATAAATCAAAATCAACTGAGGTGGCTAGAGGTGTGTCCAAAGATGATAAGACACAGAAACTAGCCCTGAGGCAGAAATTAGCTCTGAGACACTGGCTTGAAGCTATTGATCCCCGCCATCGATATGGGCACAACCTGCATTTCTACTATGAAGTCTGGTTTGGTAGCCAGAGTTCTCAGCCTTTTTTCTACTGGCTGGATCTTGGGGATGGCAAAAAAGTAAATCTCGAGATATGCGAAAGAGAGCAATTGCAGAAGCAGCGCATAAAGTACCTTGGCCCTGAGGAGAGGCAACCATATGAAGTGATTGTAAAGGGAGGTAGGCTTGTTTACAGACAAAGCAAGAACCCTGTACACACCAACACTTCTGAGGGATCTAAATGGATTTTTGTTCTCAGCCCATCCCGAATTCTGTATGTTGCGGAGAAGGAAAAAGGCCAATTTCAGCACTCTAGCTTTCTGGCTGGGGGTTCTACAATTGCATCTGGAAGAATGGTGGTCAACAATGGAGTACTTAATGTTATATGGCCCTATAGTGGTCATTACCGTCCAACAGTGAAGAATTTCAGGGAGTTCATCTGCTTCTTGGAGGAGCACAATGTTGATATGACAGATGTAAAGAAGCATCCTGTTGATGATGATGTCCCACCTCCTAGACCAGTTGATGAAGAGCTGCCATTTGAAAACATAGAAGGTAATGGGGTTTCAAGTGACTCAGACACTCCCAATAATCACGGTCAAGAAAATGTGGGTCAGGTTGCTACCAATGTGGAAGCTTCACTTCAACAGAACAAGCCATTGACATGCAAATGGACTACTGGTGTTGGTCCTAGGATTGGTTATGTGGGAGAGTATCCAAAAGAAATCCAGCTTCAAGCACTTGAACAACTCAATCTACCACCAATGGACAATCATGAAACATCATTTGCAGGAAAAACACCCATTCCCTCTCCAAGGCCTAGTCCAAAATTCTACTTGTCACCTAGGCTTGAAAAGTGCGGTGGTGATACCAAGAGTAAGAACAAGTGGAAGAAGCTATGGAGGACCTCTTCAGAAGGGTCCTCCATGAAGAAGGGTTGTGGTGGTGGTGGTGTTTCTCATTCCTCTCCGCTTAATGCTGCGGTGGCTGTGGTGGTTCGAGCTCCTCCCAAAGATTTCATGCTCATCAAGCAGGAATGGGCTGCAATTCGCATTCAGTCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAGGGGAGTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAAGCTCTTGTTCGAGTTCAGGCACATGTAAGGGCTAGGAATGTGAGGAAGTCTGAGGAAGGGAAAGCGGTGCAGAAATTACTCGATGAGTATCGCAACCAAGCTGATCCTGTTAAGCTGGCTGAGCATGGATGGTGTGAAATTCCTGGAACTGTGGATGAAGTTAAAACAAAGCTAAAGATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCTATGGCATACTCTCTCTCTGCACAGCATTCAAGACTGAGTGCTAGTCCAAACTCCAAAGCCACAAAATCAGTGACTCTTCTCAAGCATCACAGCATAGACAACAAGAGCTTAGGAAGCAGCTTGTTAGAAAAATGGATGGTGACCAAGCCCTGGGAGAGTCCAATCTCAAGGAAGAGTGAAGACCTTGTTCCTCACTTTCAATCAAGAAGGAATGGTGTGACGACTAGGATTTCAGTTAAACCCCTTGCAACATGTCAACCAACTTCATCATCATCAACCATAAGCTCTGAGTATGATGATAGCCCTGCTGTATCAACTACATGCACATCTGCATCTTTGCCATCCACCAACACTGCTATGGTGGAAGCAACAGAGGAAAGAGATGTTCATCAACCTAGCTACATGAATTGGACTCAATCAACTAAGGCTAAATTGAAGTGTTCTTCACAGAATTCAAAGAAGCTTGGAATGGAGGATTGTCTGTCTCATAGTACAACAACAGTAACAAATGGAGATAACAGAAGCAGTTCTGGTTCTGATCCTTCAGTGAATTTGTGGAAGGATCTTTGTTCTACACCTCTAAGGGCAAGGTATCAAAAGCGATATGCTGGGCCAGGAAGATGA 2331 0.4496 MFSHKRVVAAAIKMQKVYRSYRIRRKLADCAVICEELWWKAKDFTASNECLTTHVDSDKSKSTEVARGVSKDDKTQKLALRQKLALRHWLEAIDPRHRYGHNLHFYYEVWFGSQSSQPFFYWLDLGDGKKVNLEICEREQLQKQRIKYLGPEERQPYEVIVKGGRLVYRQSKNPVHTNTSEGSKWIFVLSPSRILYVAEKEKGQFQHSSFLAGGSTIASGRMVVNNGVLNVIWPYSGHYRPTVKNFREFICFLEEHNVDMTDVKKHPVDDDVPPPRPVDEELPFENIEGNGVSSDSDTPNNHGQENVGQVATNVEASLQQNKPLTCKWTTGVGPRIGYVGEYPKEIQLQALEQLNLPPMDNHETSFAGKTPIPSPRPSPKFYLSPRLEKCGGDTKSKNKWKKLWRTSSEGSSMKKGCGGGGVSHSSPLNAAVAVVVRAPPKDFMLIKQEWAAIRIQSVFRAFLARRALRALRGVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAHVRARNVRKSEEGKAVQKLLDEYRNQADPVKLAEHGWCEIPGTVDEVKTKLKMRQEGAIKRDRAMAYSLSAQHSRLSASPNSKATKSVTLLKHHSIDNKSLGSSLLEKWMVTKPWESPISRKSEDLVPHFQSRRNGVTTRISVKPLATCQPTSSSSTISSEYDDSPAVSTTCTSASLPSTNTAMVEATEERDVHQPSYMNWTQSTKAKLKCSSQNSKKLGMEDCLSHSTTTVTNGDNRSSSGSDPSVNLWKDLCSTPLRARYQKRYAGPGR* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5017 776 MobiDBLite consensus disorder prediction 289 306 - -
Lja3g5017 776 Gene3D - 446 499 - -
Lja3g5017 776 ProSiteProfiles IQ motif profile. 472 499 IPR000048 GO:0005515
Lja3g5017 776 ProSiteProfiles IQ motif profile. 448 476 IPR000048 GO:0005515
Lja3g5017 776 MobiDBLite consensus disorder prediction 264 283 - -
Lja3g5017 776 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 9 387 IPR044159 -
Lja3g5017 776 SMART iq_5 447 469 IPR000048 GO:0005515
Lja3g5017 776 SMART iq_5 470 491 IPR000048 GO:0005515
Lja3g5017 776 SMART iq_5 6 28 IPR000048 GO:0005515
Lja3g5017 776 MobiDBLite consensus disorder prediction 264 306 - -
Lja3g5017 776 PANTHER CALMODULIN-BINDING FAMILY PROTEIN 9 387 - -
Lja3g5017 776 Pfam IQ calmodulin-binding motif 450 469 IPR000048 GO:0005515
Lja3g5017 776 Pfam IQ calmodulin-binding motif 9 26 IPR000048 GO:0005515
Lja3g5017 776 ProSiteProfiles IQ motif profile. 9 36 IPR000048 GO:0005515
Lja3g5017 776 MobiDBLite consensus disorder prediction 734 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5017 Lja-Chr3 92365788 92377852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5017 403 758 IQD Protein Family AT2G26180 46.825 8.54e-85 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5017 - - lja:Lj3g3v0323320.1 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5017 3 92365788 92377852 Lja3g5017 3 92365788 92377852 ECH
Lja3g1512 3 16279682 16283110 Lja3g5017 3 92365788 92377852 PCT