Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5013 ATGCCGCGGGGGAGGATCAGGGCAAGGCTCCGCAGGAGCAGTCTTTACACATTTGGTTGTCTTAGGCCAACCACTAGTGATGAAGTGCCTCATCCCCTTCAGGGTCCGGGCTACTCAAGGACGGTGTATTGCAACCAGCCTCTGATCCATGAAAAGAGATATCTGTTTTACTGCAAGAATCGTATATCGACGACCAAATACAATGCGGTCACCTTTTTTCCTAAGGCGCTGTTTGAACAGTTTAGAAGGGTTGCTAATATATATTTTCTATTGGCTGCTTGCCTCTCAGCGTCACCAATTTCGCCTCTTAGCCCGTTGAGCATGATTGCTCCTTTGGTGTTCGTTGTGGGGCTTAGTATGGCAAAGGAAGCGTTGGAGGATTCACGCAGGTTTGTTCAGGATGTCAAAGTTAATCACCGGAAAGCTAGACTACACAGAGGAGATGGTGTTTTTGGTCTCAGGTCGTGGCAGAAAATTATGGTTGGGGATGTGGTGAAAGTAGAAAAGGACCAATTTTTTCCTGCTGACTTGTTTCTCTTGTCATCTAGTTATGAGGATGGGATATGCTATGTGGAGACTATGAATTTAGATGGCGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCTCGTCTCTTGACAATGATGGAGCTTTTAAGGATTTCTCTGGAACAATCCGTTGTGAAGATCCAAATCCCAATCTTTATACTTTTATTGGGAACTTTGAGTATGGACGTCAGGTTTATCCTCTTGATCCTAGTCAAATTCTTCTCAGAGATTCGAAGCTTAGGAACACAGATTATGTCTATGGGGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCTACTACGTCCCCTTCAAAAAGGAGCACAGTAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTTCTTATATTGATATCCTTTATAAGTTCAATAGGATTTGTTGCCAAGACTAAGTACCAAAGCACAAAGTGGTGGTATTTACAGCCTAAAAATATTGAATCCCAGTATGACCCTGCGAAAATTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTTATTCTTTATGGATACTTGATACCCATCTCGCTATATGTTTCAATTGAGCTTGTGAAGGTATTGCAAGCAAGGTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGAACGCCAGCTGATGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCCTATGGCGTGCGTTCCAGTGAAGTTGAACTTGCTGCAGCACAGCAGATGGCTTCTGATGAGGAGCAGGACTTGGACCTCTCTAGCTTTCCTATGAAGAAGAAGAGTAAAGTGCGCTCGGGAAATGTTAGAGAAGGTGAAGAAGTTGAACTTGAAAGTGTTGTTACTTCCAAAGGTGATGAGGATCGGAGGCCTGCCATAAAGGGATTTGGTTTTGAAGACTACCGCCTCATGAATGGTAATTGGTTGAAGGAACCCAAATCTGATGTCCTTTTGATGTTTTTCCGGATATTAGCAGTTTGCCATACTGCCATTCCAGAGCTAAATGAGGAGACTGGCAGTTGCACATATGAAGCTGAGTCACCTGATGAAGGAGCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTTGAATTTTACAGAAGAACTCAATCAAGTGTTGTCATACGTGAAAGATTTTTTGCTTCAGGAAAAGTGGTTGAAAGAGAGTATAAAATCTTGAATATTCTGGATTTTACTAGCCAAAGAAAGCGTATGTCAGTGGTTGTGCGTGATGAGGAGGGAAGCATTATTCTCTTGTGCAAAGGAGCTGATAGTATCATATTTGATCGATTATCTAAGGATGGAAAGATGTATTTGGAGGCTACTACTAAACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTTGCCCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAATAATGAGTTTCAGAAAGCCAAGACAGCTGTGGGGCCTGATAGAGAGGCAATGCTTGAAAATGTATCAGACATTATGGAACGAGAGTTGCTTCTTGTTGGGGCTACTGCCGTGGAAGACAAACTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTAGCTCAAGCTGGCCTAAAAATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATATGTATCAGTACTATGAATTCAGATTCAGTAACCATTCCTGGGAAAGAGGTCATCAAAGACGACATCTTGAATCAAATCACCAATGCTTCACAAATGATAAAGGTGGAGAAGGACCCTCATGCCGCGGTTGCATTAATTATTGACGGGAAAACTTTGACATATGCTTTAGAAGATGATATCAAGCACCACTTTTTGGGATTGGCTGTTAATTGTGCATCTGTCATTTGCTGCCGTGTGTCTCCCAAGCAAAAGGCCTTGGTAACAAGGTTAGTCAAAGAAGGAACGGGGAAGACCACTTTAGCAATAGGTGACGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGCGTCGGAATCAGTGGAGTTGAAGGTATGCAGGCCGTGATGGCTAGTGACTTTTCCATTGCCCAATTTCGGTTTTTGGAGCGGCTTCTTGTGGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGATTCTCTGGTCAATCCGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCACTGCCTGTCATATCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTGTATTCCTCCCTCGTCATCTTCTTCCTTGTCATCATCATCTTCTATGACCAATCATTCCGTTCGAATGGCCAGACTGCGGACATGGCGGCTGTTGGTACCACCATGTTCACTTGCATCATCTGGGCCGTTAATTCCCAGATTGCGCTGACAATGTGCCATTTTACATGGATTCAACACCTCTTTGTGTGGGGAAGCATAATCACTTGGTACCTCTTTCTCATTTTATATGGCATGCTTTCTCCAACATATTCGAAGACTGCGTACCAAATATTTGTTGAGGTTCTTGCTCCTGCTCCTATTTATTGGTTGACGACCCTTCTAGTAACGTTTACATGCATTCTTCCTTATCTGGCTCACATATCCTTCCAAAGATGTTTTAATCCCATGGACCATCACATCATCCAAGAAATCAAGTACTACAAGAAGGATGTTGAAGATCAACGCATGTGGACGAGGGAGCGGTCCAAAGCAAGACATGAAACGAAGATTGGATTCACAGTGAGGGTGGAGGCAAAGATCAGGCAGTTGAAAGTGAAGCTGCAGAAGAAGCAATCTCCATCTCATTCATGA 3657 0.4255 MPRGRIRARLRRSSLYTFGCLRPTTSDEVPHPLQGPGYSRTVYCNQPLIHEKRYLFYCKNRISTTKYNAVTFFPKALFEQFRRVANIYFLLAACLSASPISPLSPLSMIAPLVFVVGLSMAKEALEDSRRFVQDVKVNHRKARLHRGDGVFGLRSWQKIMVGDVVKVEKDQFFPADLFLLSSSYEDGICYVETMNLDGETNLKVKRSLEATSSLDNDGAFKDFSGTIRCEDPNPNLYTFIGNFEYGRQVYPLDPSQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTTSPSKRSTVEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQSTKWWYLQPKNIESQYDPAKIGLAGMSHLITALILYGYLIPISLYVSIELVKVLQARFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAQQMASDEEQDLDLSSFPMKKKSKVRSGNVREGEEVELESVVTSKGDEDRRPAIKGFGFEDYRLMNGNWLKEPKSDVLLMFFRILAVCHTAIPELNEETGSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFFASGKVVEREYKILNILDFTSQRKRMSVVVRDEEGSIILLCKGADSIIFDRLSKDGKMYLEATTKHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGPDREAMLENVSDIMERELLLVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTMNSDSVTIPGKEVIKDDILNQITNASQMIKVEKDPHAAVALIIDGKTLTYALEDDIKHHFLGLAVNCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQSFRSNGQTADMAAVGTTMFTCIIWAVNSQIALTMCHFTWIQHLFVWGSIITWYLFLILYGMLSPTYSKTAYQIFVEVLAPAPIYWLTTLLVTFTCILPYLAHISFQRCFNPMDHHIIQEIKYYKKDVEDQRMWTRERSKARHETKIGFTVRVEAKIRQLKVKLQKKQSPSHS* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5013 1218 Gene3D - 576 696 IPR023299 GO:0000166
Lja3g5013 1218 Gene3D - 434 488 IPR023299 GO:0000166
Lja3g5013 1218 SFLD p-type atpase 405 930 IPR044492 -
Lja3g5013 1218 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
Lja3g5013 1218 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 429 684 IPR023299 GO:0000166
Lja3g5013 1218 Pfam Cation transport ATPase (P-type) 544 649 - -
Lja3g5013 1218 Gene3D - 112 289 - -
Lja3g5013 1218 Gene3D - 719 919 IPR023214 -
Lja3g5013 1218 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 850 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja3g5013 1218 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lja3g5013 1218 SUPERFAMILY HAD-like 410 923 IPR036412 -
Lja3g5013 1218 SFLD C1.7: P-type atpase like 405 930 - -
Lja3g5013 1218 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1153 IPR023298 -
Lja3g5013 1218 Gene3D - 419 433 IPR023214 -
Lja3g5013 1218 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lja3g5013 1218 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Lja3g5013 1218 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Lja3g5013 1218 Coils Coil 448 468 - -
Lja3g5013 1218 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Lja3g5013 1218 SUPERFAMILY Calcium ATPase, transduction domain A 141 286 IPR008250 -
Lja3g5013 1218 CDD P-type_ATPase_APLT_Dnf-like 60 1039 - -
Lja3g5013 1218 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Lja3g5013 1218 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5013 Lja-Chr3 92317656 92324313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5013 1 1214 Primary Pumps ATPases AT1G17500 74.650 0.0 1910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5013 K01530 - gmx:100778710 2141.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5013 3 92317656 92324313 Lja3g1529 3 16544693 16551375 PCT