Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5011 ATGGAAGCTCGCGTTGGGAACAAGTTCCGTCTTGGTCGCAAGATTGGTAGCGGATCGTTCGGCGAGATCTATCTTGGTACGAATATCCAGACAAATGAAGAAGTTGCAATTAAGCTTGAAAATGTCAAAACCAAGCATCCTCAGTTGTTGTATGAGTCAAAGTTGTATAAAGTACTGCAAGGAGGAACTGGGATTCCAAATGTGAGATGGTTTGGTGTTGAAGGAGAATACAATGTCCTTGTGATGGATTTACTAGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAGCCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTATTCATACCAAATCATTTTTACATAGGGACATTAAACCAGACAACTTCCTCATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGCCTTGCTAAGAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATCTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAACAAAGCCGCAGGGATGACTTGGAGTCACTTGGATATGTTTTTATGTATTTTTTGAGAGGAAGCCTTCCATGGCAGGGACTGAAAGCAGGAACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACCTCTATTGAGTCTCTATGCCGTGGCTACCCCTCAGAATTCGCTTCATACTTCCATTACTGTCGGTCGCTGCGGTTTGATGATAAACCAGATTATGCATATCTGAAAAGGCTTTTTCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGACTACGTCTTTGATTGGACCATATTGAAATATCAGCAATCTCAAATTGCTGCTCCTCCTGCACGTGCCGTTGGCGCTGTCGCCGGACCAAGTTCTGGCTTGCCGCCAGCTATTGTAAATGCTGATAGACAGACAGGTGGGGAAGACGGCAGGCTTGCTGGTTGGTCTTCATCAGATCCTTCTCGTAGAAGAAACTCTGGACCTATTGTAAATGATGGAATCTTATCCAGACAAAAAGCTCCAGTTACAAGTGACTCAGTTGGATCTAAAGATGTTTTGTTGTCTAGTTCTAATTTCCCCCGGACACTTGGGTCTACAAGGCGAGGTGCTGTTTCTAGCAGTCGCGATGCAGCTGTTTTCAGTGAGACTATGACCTCTCATCATCCTCTTGGTGTGGATGCTAGTCCAGCAGCACTCCGGAAAATCTCTGGTGCTCAAAAAGGTTCAGCTATCACATCATCGGAGCACAACCGAACATCCTCTGGAAGAAACACATCAAACATAAAGAATTTGGAGTCAACTCTCCGAGGTATTGAGGGTCTGAGTTTCAATGACGAGAGGGTACAGTATTAG 1425 0.4337 MEARVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHTKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVFMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIAAPPARAVGAVAGPSSGLPPAIVNADRQTGGEDGRLAGWSSSDPSRRRNSGPIVNDGILSRQKAPVTSDSVGSKDVLLSSSNFPRTLGSTRRGAVSSSRDAAVFSETMTSHHPLGVDASPAALRKISGAQKGSAITSSEHNRTSSGRNTSNIKNLESTLRGIEGLSFNDERVQY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5011 474 MobiDBLite consensus disorder prediction 430 451 - -
Lja3g5011 474 MobiDBLite consensus disorder prediction 319 374 - -
Lja3g5011 474 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 459 IPR030509 GO:0004672|GO:0005524
Lja3g5011 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5011 474 MobiDBLite consensus disorder prediction 429 451 - -
Lja3g5011 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lja3g5011 474 PANTHER CASEIN KINASE-RELATED 1 459 - -
Lja3g5011 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja3g5011 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5011 474 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5011 474 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Lja3g5011 474 CDD STKc_CK1_delta_epsilon 8 282 - -
Lja3g5011 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5011 Lja-Chr3 92291101 92296345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5011 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.81e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja3g5011 Pkinase 4.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5011 K02218 - gmx:100778165 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5011 3 92291101 92296345 Lja3g1530 3 16552395 16556951 PCT