Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5009 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGACGCCCTCCACCGTGGCGTCCAGAAGTACGGCGCCGGCAAGTGGAAGAACATCCTCAAAGATCCGGAGTTCGCTCCTTCCCTCACCAGCCGTTCCAACATCGATCTCAAGGATAAATGGCGGAATTTGAATGTTGTCACTGGTCAAGGCTCCAATATTAAGTCTAGGACTTCCAAGCCCAAACTAACAGCACCTTCAACTCCAGTTCCCAATCAGCAAAATGCTACTCCTTCTGTGCAAAATGTTGCTACTCCTAAGGTTCCAACTCCATCTCAAAATTCTGCTGAAAAGGATCACGAGGCCAAAGTTCCTCCGAGGTACAATGCAATGATATTTGAAGCTTTATCGTCGATCAAGGATGCTGATGGTTCTGATATGAATGCCATTGTTAGTTTCATCGAGCAAAAACACACAAACACACTTCATCAAAATTTCAGAAAGGCATTAGGTGCAAGGTTAAGGAAGCTTGTTCATCAGGGGAAGCTTGAAAAGGTACAAAATTGCTACAAGATTAAAAAGGACACCCCATCGGGACCAAGATTACCCTCTCCAAAATCACCTGTGCCAGAACAAAAGGATTTACGGCCACAACAATCCCCAACCTCTAGTTTTGTGACATGTAATGAGATAATAAAGGATGCCGCTGATACTGCAGCCTACAGAGTTGCTGACGCCGAGAACAAATCATTTTTGGCCGCTGAGGCAATGAGGGAGGTGGAGAGAATCTCAAGGCTGGCTGAAGATACTGTTTCAACGTTACAGCTTGTGAAAGAGATTTATGAAAAATGTTCACGTGGTGAAATTGTCCTTTTGGCTTAA 858 0.4487 MGNQKQKWTAEEEDALHRGVQKYGAGKWKNILKDPEFAPSLTSRSNIDLKDKWRNLNVVTGQGSNIKSRTSKPKLTAPSTPVPNQQNATPSVQNVATPKVPTPSQNSAEKDHEAKVPPRYNAMIFEALSSIKDADGSDMNAIVSFIEQKHTNTLHQNFRKALGARLRKLVHQGKLEKVQNCYKIKKDTPSGPRLPSPKSPVPEQKDLRPQQSPTSSFVTCNEIIKDAADTAAYRVADAENKSFLAAEAMREVERISRLAEDTVSTLQLVKEIYEKCSRGEIVLLA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5009 285 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lja3g5009 285 PANTHER SINGLE MYB HISTONE 4 1 284 IPR044597 GO:0003691
Lja3g5009 285 MobiDBLite consensus disorder prediction 183 215 - -
Lja3g5009 285 Pfam linker histone H1 and H5 family 118 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja3g5009 285 CDD SANT_TRF 6 57 - -
Lja3g5009 285 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja3g5009 285 Gene3D - 2 58 - -
Lja3g5009 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja3g5009 285 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lja3g5009 285 SMART h15plus2 114 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja3g5009 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Lja3g5009 285 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Lja3g5009 285 MobiDBLite consensus disorder prediction 57 105 - -
Lja3g5009 285 SMART sant 4 59 IPR001005 -
Lja3g5009 285 Gene3D - 112 207 IPR036388 -
Lja3g5009 285 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 284 - -
Lja3g5009 285 MobiDBLite consensus disorder prediction 23 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5009 Lja-Chr3 92258639 92267901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5009 1 285 Single Myb Histone (SMH) Gene Family AT1G72740 43.945 1.50e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g5009 Linker_histone 2.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5009 K09422 - gmx:778177 332.413