Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5006 ATGGCGTACCAGACCCCAGATCACGAATCAAACTCCGATTCCAACACCCCAACCCGCCTCTACAACCCCTACAAGGATCTCGAGGTCCCCATTCGAAACCTCTACCAGCTCCCAACCTCCCCTGAGTACCTCTTCGTCGAGGAAGCTCGCCGGAAGCGTCGCTCATGGGGCGAGAATCTCACCTTCTACACCGGCTGCGGTTACCTCGCCGGCGCTGTTGGCGGCGCCGGCGTTGGATTCGTTGAAGGCGTAAAATCGTTCGAGACTGGGGATTCCGTCAAGCTCCGGGTTAATAGAATTCTCAACTCGTCTGGCCATGCGGGTCGGTCGTGGGGGAACCGGTTGGGCGTGATCGGTTTGCTTTATGCTGGGATTGAGAGCGGGATTGAGGCTGCGAGAGATACCGATGATGTGTGGAATAGTGTCGCTGCGGGGCTTGGTACCGGCGCGTTGTATCGGGCGGCGAGAGGGGTGAGATCGGCTGCTGTCGCGGGTGCTGTTGGCGGAGTTGTGGTTGGAGTGGCGGTCACGGCGAAGCAGGCGTTGAAACGTTATGTGCCGATATGA 567 0.5908 MAYQTPDHESNSDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTGCGYLAGAVGGAGVGFVEGVKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYAGIESGIEAARDTDDVWNSVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGVAVTAKQALKRYVPI* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5006 188 Pfam Tim17/Tim22/Tim23/Pmp24 family 62 171 - -
Lja3g5006 188 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-2-LIKE 10 188 - -
Lja3g5006 188 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g5006 188 PANTHER TIM23 10 188 IPR045238 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5006 Lja-Chr3 92168548 92169601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5006 7 188 Chloroplast and Mitochondria Gene Families AT1G72750 68.108 5.35e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5006 K17794 - gmx:100777112 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5006 3 92168548 92169601 Lja3g1545 3 16857693 16858793 PCT