Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5005 ATGGCTTGCAATGCAGAAGAACTGGGGTCCACCGTGGTCGCCATTGATAAAGACAAGAACAGCCAAATTGCTGTCAAGTGGGCTGTTGAGCACCTTCTGATGGGAGACTCCCCCTGCATCTTCATTCACGTCAGAACCAAGGCTTTGAGTTCCAATGAGTTTGATTACATCCCTAAGCAAGGTCGTTCACCAACCGAAGAAGAATTGCACCAGCTTTTTCTCCCCTTCCGAGGGTTTTGTGCTCGAAAAGGGATTACAGCAAAGGAGTTGGTCCTGCATGACATTGATGTTTCGAGTGCGCTTACAGATTACGTCATCGACAACTCTATCAGCAATATTGTTGTTGGTGCTTCCCGCTGGAATTATCTTATAAGGAAATTTAAAGATGTAGACGTGGCAACAAGCTTAGTGAGATCTTTGCCAGAGTCATGCATGGTGCATATTATATCAAAAGGAAAGGTGCAGAGTATTCATCCAGCAGGTCATCCTCAAAATGTTGCTACACACACAAAATCATGCAAAGATATATCTACTCAAAAAAATCTCTTCAAAGGATCAAGCAGAAAATCATACAAATATGGTAGTCGGATAGCCTCAAGCAGTGATGGAGAGAAAGCTGAACCAAGACTATCACGTGCAAGTTCCTGCTCACCAAGTTCATCAAATCATAGTTCCTTAGCCAGTATTGATAATTCAAGGCAGCTTGGATCTCTGTTGAATGAAACTTCACATGAAAACCAATGTCTACTCAAGAAGTCAAGCAGTTGTAGCAACCAATCTTCTAATAAGTCGTCGAAAAACATGGAGGTAGCTGTGAAGAAATTAAAGCTGGAATCGAAGAAATCAACAAAGGAGTGTATAAAGGCCAGCAAGGAAGCTATTGCAGATAAACAGAAGGCAATGGAACTTGAAAAGCATAGGCAAGAAGAACAGAACATGGAAAAAGCTAAACTTGTTGAAGAGGCTGCATTGGCTCTGGCAGAGGTAGAGAGCCAGATAATCCATGCAGCTATGGAGTCAGAGAGAAAGCAGGCTGAAATCAGTGCTACGCATGATGAAGAAGAGATAAAGAGAGCATCAAATGCAAGCGCAGAAAACAATATTGAATTTAGAATATACGACATTAAAGAAATTGAAGTTGCAACCAATTTCTTTGACACTGCTCTCATACTAGGTGAAGGTGGATATGGACCTGTCTTCAAAGGGGTGCTTGATCATACTATTTTTGCTGTTAAGGTCTTGAGACCAGACATAACCCAAGGGGAGAGGCAATTTAACCAAGAGGTTCAAGTTTTGAGAACCATAAAACATCCAAATATAATTCAACTTCTTGGTGCCTGCCCTGAGTACGGATGCCTTGTATACGAGCTCGTGCCTAACGGAAGCTTAGAAGACCGCCTCTTCCTGAAGGACAACAGCCCACCACTTCCATTGAAGATTCGGTTCAAAATAGCATCAGACATTGCCACAGGCCTTCTCTTCCTCCACAAGTTAAAGCCAGAGCCAATTGTGCACCGTGACCTCAAGCCAGCAAACATCTTGTTGGACAGGAACTTTGATAGCAAGATTGCTGATGTGGGTTTGGCCAGGCTTGTTCCTCCTTCTGTGGCCAACAAAAGTACTCAATACCACAAGACAACAGCAGCTGGCACATTTTGCTATATTGATCCTGAGTATCAGCAAACAGGACTATTGGGTGTGAAGTCAGACATATATTCATTAGGTGTGCTGCTTCTGCAGATTATTACCGGAAGGCCTCCAATGGGTGTGACTCACCTTGTTGAGGAGGCTGTTGAAAAAGGTAACTTGGAAGAAGTGCTTGATCCAAATGTGACAGGTTGGCCTATTGAGGAGATTTATTCTTATGCTAGCTTGGCTTTGAAGTGTTGTGAGATGAGGAAAAGGGATAGACCTGACCTTGGTTCTATTAATGTTTAA 1938 0.4283 MACNAEELGSTVVAIDKDKNSQIAVKWAVEHLLMGDSPCIFIHVRTKALSSNEFDYIPKQGRSPTEEELHQLFLPFRGFCARKGITAKELVLHDIDVSSALTDYVIDNSISNIVVGASRWNYLIRKFKDVDVATSLVRSLPESCMVHIISKGKVQSIHPAGHPQNVATHTKSCKDISTQKNLFKGSSRKSYKYGSRIASSSDGEKAEPRLSRASSCSPSSSNHSSLASIDNSRQLGSLLNETSHENQCLLKKSSSCSNQSSNKSSKNMEVAVKKLKLESKKSTKECIKASKEAIADKQKAMELEKHRQEEQNMEKAKLVEEAALALAEVESQIIHAAMESERKQAEISATHDEEEIKRASNASAENNIEFRIYDIKEIEVATNFFDTALILGEGGYGPVFKGVLDHTIFAVKVLRPDITQGERQFNQEVQVLRTIKHPNIIQLLGACPEYGCLVYELVPNGSLEDRLFLKDNSPPLPLKIRFKIASDIATGLLFLHKLKPEPIVHRDLKPANILLDRNFDSKIADVGLARLVPPSVANKSTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVLLLQIITGRPPMGVTHLVEEAVEKGNLEEVLDPNVTGWPIEEIYSYASLALKCCEMRKRDRPDLGSINV* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5005 645 CDD STK_N 10 152 - -
Lja3g5005 645 MobiDBLite consensus disorder prediction 194 227 - -
Lja3g5005 645 PANTHER OS02G0152300 PROTEIN 10 642 - -
Lja3g5005 645 SUPERFAMILY Protein kinase-like (PK-like) 367 641 IPR011009 -
Lja3g5005 645 Pfam Protein kinase domain 390 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5005 645 ProSiteProfiles Protein kinase domain profile. 385 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5005 645 Pfam Universal stress protein family 12 146 IPR006016 -
Lja3g5005 645 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 10 642 - -
Lja3g5005 645 Gene3D HUPs 10 150 IPR014729 -
Lja3g5005 645 Gene3D Transferase(Phosphotransferase) domain 1 458 644 - -
Lja3g5005 645 MobiDBLite consensus disorder prediction 212 227 - -
Lja3g5005 645 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 127 - -
Lja3g5005 645 SMART serkin_6 385 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g5005 645 Gene3D Phosphorylase Kinase; domain 1 361 457 - -
Lja3g5005 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5005 Lja-Chr3 92159331 92166345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5005 11 643 Receptor kinase-like Gene Family AT1G17540 46.316 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja3g5005 Pkinase 8.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5005 - - gmx:100814365 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1549 3 16879027 16885008 Lja3g5005 3 92159331 92166345 PCT