Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5002 ATGGAGGAGAAGGGAATGGAAGCGCGAGGTCGCACCGTTGAAGAGATTTACGAGGATTTCAAGGGCCGCAGAGCCGCCATCATCAAAGCCCTCACCACCGATGTTAAAGATTTCTACAACCAATGTGATCCTGAGAAGGAAAATTTGTGCTTATATGGATTACCTAGTGAGCAGTGGGAAGTGAATTTGCCTGTTGAAGAGGTTCCTCCGGAGCTTCCTGAGCCTGTGCTGGGCATTAATTTTGCTAGGGATGGCATGGAAACAAAAGACTGGCTATCCTTAGTTGCTGTTCATAGTGATACATGGTTACTATCCCTTGCATTCTATTTTGGAACCAGATTTGGGTTTGACAAAGGTGACAGGAAACGACTATTCAACATGATTAATGATCTGCCAACTATATTTGAAGTTGTTACTAATCCAACAAAGAAACCAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGCGCGGGCTGCTGAAACTCAGGGTAGACAGTCAAAAGTATCACTATCAAAAGACGAGGATGAGGGGATAGAAGAGCAAGATGACGATGAACATGGAGACGCCTTGTGTGGAGCATGCGGTGACAATTACGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGACCTCGCTAA 762 0.4514 MEEKGMEARGRTVEEIYEDFKGRRAAIIKALTTDVKDFYNQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMETKDWLSLVAVHSDTWLLSLAFYFGTRFGFDKGDRKRLFNMINDLPTIFEVVTNPTKKPVKEKSSVSNNSGSKSKSSSKARAAETQGRQSKVSLSKDEDEGIEEQDDDEHGDALCGACGDNYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRPR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5002 253 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Lja3g5002 253 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Lja3g5002 253 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Lja3g5002 253 CDD PHD_AL_plant 200 250 IPR044104 -
Lja3g5002 253 SMART PHD_3 200 248 IPR001965 -
Lja3g5002 253 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Lja3g5002 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Lja3g5002 253 PANTHER CPG BINDING PROTEIN 6 253 IPR045104 GO:0006355|GO:0042393
Lja3g5002 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 253 - -
Lja3g5002 253 MobiDBLite consensus disorder prediction 145 195 - -
Lja3g5002 253 MobiDBLite consensus disorder prediction 145 176 - -
Lja3g5002 253 Pfam PHD-finger 201 250 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5002 Lja-Chr3 92142885 92146695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5002 11 253 Alfin-like Transcription Factor Family AT3G42790 74.074 4.96e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja3g5002 Alfin 6.4e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5002 - - gmx:100794662 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1555 3 17064288 17068213 Lja3g5002 3 92142885 92146695 ECH
Lja4g1539 4 14332096 14335706 Lja3g5002 3 92142885 92146695 ECH
Lja6g2026 6 48361748 48365637 Lja3g5002 3 92142885 92146695 ECH
Lja3g5002 3 92142885 92146695 Lja3g5002 3 92142885 92146695 ECH
Lja3g5002 3 92142885 92146695 Lja3g1555 3 17064288 17068213 PCT