Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5001 ATGAAGTGTTTATGTGAGAAGGACCCTGGTCTATGTTCTGCTCATCCATCATCCACCCATGTTCTTGGAGGCCCATCATGGGCAACTTCTTCTGAATCTGAAGTCCCACATTCCTCTATCTCCAACAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAGCAATGCCACAAGAGCAAGGCACTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCATCTCAATCATCTGGTCAATCTTATCCCGAAGTTGGATCTGCACAATCAGGTCAAATTTCTTTCCAGCATAGTTCTTCTACTGGTTCCGCATTTAGCAACGCTGAGGGGAAGAGTATGGGATACCTCGTCAGGTCATCTATGGCGAGTCGGGATTTCACCTACCCTCCAGTACTGGATCACAGCCAAGCACTTGCTCATGCTGCATTCTACTATGCTGATCCATGCTATACTGGGGCAGCATATGCCCCGCAGTCTAAGATTCATCATGCCCAGCTTATGGGAACTGGTGTTCGAGTCCCTCTGCCATCTGATTATACAGAAGAACCCATATACGTGAATTCAAAGCAATACCATGCTATTCTGAGGCGAAGACAGTATCGAGCTAAACTTGAAGCGCACAACAAACTCATCAAGGATCGGAAACCTTATCTTCATGAGTCCCGCCATCTACATGCATTGAAGAGAGCTAGAGGTGTTGGCGGCCGCTTCCTCAACACTAAACAACTCGAAGAATCAAAGCTTACTTCACCAAACCACGGCCTTAAATTTTCCGGCTCTACTCGTTTGAATTTGAGTGGAAATGTGCCAGAATCTAATGAAACCCATCATCAGGACTCAGATTTCAGGTTATGCAGTTACCCTTCTCACACTGGAAGGAACATGCAGGATTATACCGTCGATAAGGGCGGTGGTGGTGCGAATCAACGCCGACTATCTGTCCTCATGTGA 945 0.4635 MKCLCEKDPGLCSAHPSSTHVLGGPSWATSSESEVPHSSISNSLSLKVDVLPQQCHKSKALSFQFQEQDSSSSQSSGQSYPEVGSAQSGQISFQHSSSTGSAFSNAEGKSMGYLVRSSMASRDFTYPPVLDHSQALAHAAFYYADPCYTGAAYAPQSKIHHAQLMGTGVRVPLPSDYTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGVGGRFLNTKQLEESKLTSPNHGLKFSGSTRLNLSGNVPESNETHHQDSDFRLCSYPSHTGRNMQDYTVDKGGGGANQRRLSVLM* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5001 314 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 MobiDBLite consensus disorder prediction 246 314 - -
Lja3g5001 314 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 21 264 - -
Lja3g5001 314 Gene3D - 178 239 - -
Lja3g5001 314 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 MobiDBLite consensus disorder prediction 246 271 - -
Lja3g5001 314 MobiDBLite consensus disorder prediction 15 34 - -
Lja3g5001 314 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 264 IPR001289 GO:0003700|GO:0006355
Lja3g5001 314 MobiDBLite consensus disorder prediction 19 34 - -
Lja3g5001 314 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Lja3g5001 314 MobiDBLite consensus disorder prediction 66 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5001 Lja-Chr3 92135253 92140357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5001 14 244 CCAAT-HAP2 Transcription Factor Family AT1G17590 47.107 4.93e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja3g5001 CBFB_NFYA 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5001 K08064 - gmx:100500765 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5001 3 92135253 92140357 Lja3g5001 3 92135253 92140357 ECH
Lja3g5001 3 92135253 92140357 Lja3g1557 3 17072676 17077198 PCT
Lja3g0528 3 5283921 5287086 Lja3g5001 3 92135253 92140357 PCT