Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4994 ATGGAATACCCATTTTCTCCTAAGGGAGGAGAACTTGGGTATTGGCAGTCTCCTAGCGCACAGTTCGGGGGATCAATATCATCAGACAATGGAATCAGCAATTCAATATCAGATGATATGCCTAACAGCTTCTCTGAGCTTTTGAACTTTGATTCTTATGCTGGTTGGTTCACTGGTCCATCCGTGACTGATCAGATTTTCGCTAATGAGCTTCCATCATTTGCCTCAGTATCATATCCATTGTCCGATGGATTCAATTTAGCTGAACAGAACAGTGGGCAATTCTTTACGACAGGAGTTTGTGGAAATAGTAGCAATCTTGAGAGCTCCTCCACTCATGGGGAGAGGGTTGTGTGTCAGCAAATGGATACCCTACTTGGTTTCTTAGATGAGACAAATGATGCAAATACCTTAAATTCTAAGCAAAAAATAAATGACACTTTGCAACAATTTAGTACGTTTGAGGAGGGAAATTACACAATCTCCAGGCCACCTGGTCCTTCACTCGATGAGAGAATGCTAAGGGCTTTGTCATTCTTTAAGGAATCCGCTGGTGGGGGCATATTGGCTCAAGTCTGGGTACCCTTAGAGCATGGTGGTCAGGTCATCTTAAGCACGAGTGAGCAACCTTATTTACTAGATCAAATGCTCGCAGGTTATCGTGAAGTGTCAAGGACATTTAAATTTCCTGCAGAAGGAAAACCAGGTGGTTTCTCAGGACTTCCTGGTCGTGTATTTGTCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTATAGTAAGAATGAGTACTTGAGGGTTGAACATGCAAGGAATTACAAGGTTCGTGGAACAATCGCTTTCCCTATATTTGACACGCACTCTGAACTGCCATGCTGTGCTGTACTGGAACTTGTCACGACAAAGGAAATGTCTGATTTTGACAGAGAATTGGAAGTTGTTTGTCATGCACTTCAGCTTGTAAATTTAAGGACTACTATGCCTCTTCGAATTTTTCCCGAGTGTTATTCAAACAATAAAAGAGCTGCTTTAGCAGAGATAGTTGATGTGTTAAAATCTGTGTGTCATGCACATAGATTGCCACTGGCATTGACTTGGATCCCCTGTTGTTACACTGAGGGCCCAAAAGGTGAAGCTATGAGGATACAAATTAAAGAGGGTCATTCAAGTTCTGGTGAAAAAGTCCTACTATGCATTGAAGAATCAGCTTGCTATGTAACTGATAGATTGATGGAAGGATTTGTTAGAGCATGCATTGAACATCCTCTTGAGGAAGGGAAAGGCATAGCTGGGAAAGCTCTTCAATCAAACCACCCTTTCTTCTATCCTGATGTGAAGGAATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTGTAATTTGAGTGCTGCAGTTGCAATTAGGCTAAGGAGTACTCATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCAGGTACTATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGTTGAATCATCAAGAATTGAAAGCACACACATGGGGTTTGAAAATAAAAATCTCCCCAGTTTTTCCCCTTTGTCTAGGGAAAATTCTCAGATACCATTAATAAATGCTAACCAGGATTCTGTTCAGAAGTCATTGAAGGCATCTAGACTGAGAAACAAGGGAAGTAAGCCTCCATATAACCAGGTAAGTAATGGATCAAGAAGGCAGGTTGAGAAAAATCGAGGTACAGCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAACACTTTTCTGGGAGTCTGAAGGATGCTGCAAAGAGCATTGGTGTTTGCCCAACAACTCTGAAGAGGATATGCAGACATCATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTTAATAGTTCATTGAAGAAAATACAAACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGTAGCTTGAAGTTTGATCCCTCCGTAGGGGCATTCGTGGCAGGAGGGTCAACCATCCAAGGAATTGATACACATAAAAGCCTTTTGTTCCCTGAGAAAAGTACTATAAGAGACCCCAGGCCTATCACACAAGATGCAGTCTCAGTACCAGCTGTACCATGTGGTGAAAGTGAGAAATCGGCGATTAAGTTGGAGGGAAAATTAAAGAAAACCAATGCTTCTTTGGTTGATTGTTGTGAAGATTCAAAATCAATGGCAATGGATGATCGGTCGAGCCACAGCTCCAGCCTGTGGACCAAGGCACAGGGTAGTTCTGAACAAGCTTCTTTGGGTTCTGATCTTGCAAAAAGAGATAAATGGGTTCTGAACAATGATGGTTTGAGAGTAGAAAATTTGAAATGTAATACTGTTGGCCAGAGTTCAGGCTCCTTTACTGATGATGAGATGGGCATTGATGTGGATAATGATGAGGTTGTTGAACTTAACCACCCTACTTGTTCAAGCTTGACAGGCTCATCTAATGGCTCTAGTCCAATGATCCATGGTAGTTCATCAAGTTCTCAGAGCTTTGAAAACCAGTCCAAAGGAAAATCAACAACTGTTGATAGGGGGTCAAAAATTATTGTCAAAGCTACCTATAGAAAAGACATCATTCGGTTCAAGTTTGATCCATCCGCAGGTTGTTTCAAGCTATATGAAGAAGTTGCAGCGAGATTCAAATTACAAAATGGGACCTTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAGTGACTCTGATCTGCAAGAGTGTGTAGACATATTGGATGACATTGGAACTCGCAGTGTGAGGTTTCTTGTTCGTGATTTGCCTTGTGTTTCTGAAGCAGTTTCTACAGAGGCAGCTCATAGCGAATTGTGA 2919 0.4156 MEYPFSPKGGELGYWQSPSAQFGGSISSDNGISNSISDDMPNSFSELLNFDSYAGWFTGPSVTDQIFANELPSFASVSYPLSDGFNLAEQNSGQFFTTGVCGNSSNLESSSTHGERVVCQQMDTLLGFLDETNDANTLNSKQKINDTLQQFSTFEEGNYTISRPPGPSLDERMLRALSFFKESAGGGILAQVWVPLEHGGQVILSTSEQPYLLDQMLAGYREVSRTFKFPAEGKPGGFSGLPGRVFVSKVPEWTSNVGYYSKNEYLRVEHARNYKVRGTIAFPIFDTHSELPCCAVLELVTTKEMSDFDRELEVVCHALQLVNLRTTMPLRIFPECYSNNKRAALAEIVDVLKSVCHAHRLPLALTWIPCCYTEGPKGEAMRIQIKEGHSSSGEKVLLCIEESACYVTDRLMEGFVRACIEHPLEEGKGIAGKALQSNHPFFYPDVKEYDISEYPLVHHARKCNLSAAVAIRLRSTHTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDVESSRIESTHMGFENKNLPSFSPLSRENSQIPLINANQDSVQKSLKASRLRNKGSKPPYNQVSNGSRRQVEKNRGTAEKNVSLSVLQQHFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNSSLKKIQTVLDSVQGVEGSLKFDPSVGAFVAGGSTIQGIDTHKSLLFPEKSTIRDPRPITQDAVSVPAVPCGESEKSAIKLEGKLKKTNASLVDCCEDSKSMAMDDRSSHSSSLWTKAQGSSEQASLGSDLAKRDKWVLNNDGLRVENLKCNTVGQSSGSFTDDEMGIDVDNDEVVELNHPTCSSLTGSSNGSSPMIHGSSSSSQSFENQSKGKSTTVDRGSKIIVKATYRKDIIRFKFDPSAGCFKLYEEVAARFKLQNGTFQLKYLDDEEEWVMLVSDSDLQECVDILDDIGTRSVRFLVRDLPCVSEAVSTEAAHSEL* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4994 972 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Lja3g4994 972 Pfam PB1 domain 877 955 IPR000270 GO:0005515
Lja3g4994 972 MobiDBLite consensus disorder prediction 570 600 - -
Lja3g4994 972 SUPERFAMILY CAD & PB1 domains 865 957 - -
Lja3g4994 972 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 733 - -
Lja3g4994 972 SMART PB1_new 874 956 IPR000270 GO:0005515
Lja3g4994 972 MobiDBLite consensus disorder prediction 753 778 - -
Lja3g4994 972 Gene3D - 871 954 - -
Lja3g4994 972 ProSiteProfiles PB1 domain profile. 874 956 IPR000270 GO:0005515
Lja3g4994 972 Pfam RWP-RK domain 602 650 IPR003035 -
Lja3g4994 972 MobiDBLite consensus disorder prediction 832 867 - -
Lja3g4994 972 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 733 964 - -
Lja3g4994 972 PANTHER PROTEIN NLP8 733 964 IPR045012 GO:0003700
Lja3g4994 972 PANTHER PROTEIN NLP8 5 733 IPR045012 GO:0003700
Lja3g4994 972 MobiDBLite consensus disorder prediction 757 778 - -
Lja3g4994 972 CDD PB1_NLP 875 955 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4994 Lja-Chr3 92087461 92093166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4994 1 956 NLP Transcription Factor Family AT2G43500 47.817 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja3g4994 PB1 2e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4994 - - gmx:100804426 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4994 3 92087461 92093166 Lja3g0582 3 5711247 5715358 PCT