Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4988 ATGATGGCGAACCCATCTGGGAACCATCAAGAACAACACGCTCATGCTCATGCTTCGTCTGCCTTAACCGGCAATTCCGTTCCTGAAGCTTCTGCCGTCGCTGTTAACATCCCCAACATGAAGCACAACCCTGGCATCTCGCTCGATTGGAGCCCTGAAGAGCAAGCAATTCTTGAAGATGGACTCTCCAAGCATGTCACAGAATCTAACATAGTGCGCTATGCAAAGATAGCCCAACTGTTACAGAATAAGACAGTCCGAGATGTAGCACTGCGAGTTAGGTGGATGAACAAGAAAGAAAATAGCAAGAGAAGGAAGGATGATCATAATTTATCCCGGAAAAGTAAAGATAAAAAGGAAAGGGTTTCTGATTCTGCAGCAAAGCCATCTCACTTTCCTGCTCGGTCCAATGTCCCCCCATATGCTCCTCCAATGATTACAATGGACAATGATGATGGCATCTCATATACAGCAATTGGAGGTCCGACTAGTGAGCTATTAGAGCAAAATGCACAGGCCTTGAACCAAATCTCGGCAAATCTTTCTGCTTTCCAGATACAGGAGAACATCAATCTTTTCTGCCAAACTAGAGATAACATCTTTAAAATCATGAATGATTTGTGTGATACACCAGAGGTGATGAAGCAAATGCCACCTCTTCCAGTGAAGGTCAATGACGAGCTAGCCAATTCAATACTTCCAAGAACCCACCACCATCATGATGCTGCTTAG 732 0.4454 MMANPSGNHQEQHAHAHASSALTGNSVPEASAVAVNIPNMKHNPGISLDWSPEEQAILEDGLSKHVTESNIVRYAKIAQLLQNKTVRDVALRVRWMNKKENSKRRKDDHNLSRKSKDKKERVSDSAAKPSHFPARSNVPPYAPPMITMDNDDGISYTAIGGPTSELLEQNAQALNQISANLSAFQIQENINLFCQTRDNIFKIMNDLCDTPEVMKQMPPLPVKVNDELANSILPRTHHHHDAA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4988 243 MobiDBLite consensus disorder prediction 100 143 - -
Lja3g4988 243 Pfam Protein of unknown function (DUF3755) 183 216 IPR022228 -
Lja3g4988 243 SUPERFAMILY Homeodomain-like 38 103 IPR009057 -
Lja3g4988 243 SMART sant 46 99 IPR001005 -
Lja3g4988 243 MobiDBLite consensus disorder prediction 100 126 - -
Lja3g4988 243 CDD SANT 50 99 IPR001005 -
Lja3g4988 243 Gene3D - 50 124 - -
Lja3g4988 243 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g4988 243 PANTHER BNAC03G35350D PROTEIN 3 240 - -
Lja3g4988 243 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 3 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4988 Lja-Chr3 92024793 92031359 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g4988 DUF3755 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4988 - - cam:101498979 363.999