Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4981 ATGGTCAAAGGAAACCATAATCCACACACCAAAGAAAATATGGACATTACTCCTTATACTTCAAAGAAAACACACTTCAACCACCACCATCATGAAGCACCCATAGACTTGCACAGGATCAACCACCCCCAACACAGTAATCCGACATCAACAAGCCGTTCTTCAGAGTCTAGTGAAACCTGTGATGATGGAAAATGGGCCTCCAAGCTTCTGAGAGAGTGTGCCACAGCAATATCAGAGAGAAACTCAACAAAAACTCACCATCTTCTATGGATGCTAAACGAACTTTCTTCCCCTTATGGAGATCCTGATCAGAAACTAGCTTCTTACTTCTTGCAAGCTCTGTTTTGCAAGGCCACAGACTCTGGCTTCAAGTGCTACAAGACCCTCTCCTCAGTTGCTGAGAAAAACCACTCCTTTGATTCAGCCAGAAAATTGATCCTCAAGTTTCAAGAGGTGAGTCCTTGGACAACCTTTGGACATGTGGCTTCAAATGGTGCCCTTTTGGAAGCCTTAGAAGGCGAGACCAAAATTCACATAGTTGATATCAGCAACACCCTTTGCACTCAGTGGCCTACTCTGTTGGAAGCTCTGGCTACAAGAAATGATGAAACTCCTCACTTGAAACTCACTGTTGTTTTGTTGAGTAATAAGATTGTAGGGTCTGTGATGAAGGAGGTTGGTCAACGAATGGAGAAGTTTGCAAGGCTAATGGGTGTTCCCTTTGAGTTTAATGTGGTTAGTGGGTTGAGGAGCCTCACAAAAGAAGGGTTAGGAGTTCAAGAGAATGAGGCAATTGCTGTGAATTGTGTTGGTGCATTGAGGAGAGTGGAGGTGAAAGAAAGGGAAAGTGTGATTGGCATGTTTAAATCACTTAGTCCTAAAGTGGTGACTTTTGTTGAGGAAGAAGGTGATTTTGTTACCTCAAGAGATGACTTTGTGAAGAATTTTGAAGAGTGCCTTAAGTTCTATAGCCTCTACTTTGAGATGTTGGAGGAGAGTTTTCCTCCAACAAGCAATGAGAGGTTGATGTTGGAGAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGCAATGATGGTGATGAAGATGGTGGTGGTGGTGGTGATCAAGGTGGTGATTGTTGTTGTGAGACAAGGGAGAGAGGGACACAATGGTCTGAAAGACTTGGGAGTGCGTTTTCCCCTGTTGGATTCAGTGATGATGTAGTGGATGATGTCAAAGCATTGCTCAAGAGGTACCAAGCTGGGTGGTCACTTGTGGTGCCTCAAGGAAATGATCATAATCTCTCAGGAATATATCTCACATGGAAGGAGGAACCAGTAGTTTGGGCATCAGCATGGAAGCCCCAGCTAGCTACTTGA 1368 0.4408 MVKGNHNPHTKENMDITPYTSKKTHFNHHHHEAPIDLHRINHPQHSNPTSTSRSSESSETCDDGKWASKLLRECATAISERNSTKTHHLLWMLNELSSPYGDPDQKLASYFLQALFCKATDSGFKCYKTLSSVAEKNHSFDSARKLILKFQEVSPWTTFGHVASNGALLEALEGETKIHIVDISNTLCTQWPTLLEALATRNDETPHLKLTVVLLSNKIVGSVMKEVGQRMEKFARLMGVPFEFNVVSGLRSLTKEGLGVQENEAIAVNCVGALRRVEVKERESVIGMFKSLSPKVVTFVEEEGDFVTSRDDFVKNFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACNDGDEDGGGGGDQGGDCCCETRERGTQWSERLGSAFSPVGFSDDVVDDVKALLKRYQAGWSLVVPQGNDHNLSGIYLTWKEEPVVWASAWKPQLAT* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4981 455 MobiDBLite consensus disorder prediction 42 57 - -
Lja3g4981 455 MobiDBLite consensus disorder prediction 33 62 - -
Lja3g4981 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 450 IPR005202 -
Lja3g4981 455 Pfam GRAS domain family 69 450 IPR005202 -
Lja3g4981 455 PANTHER PROTEIN SHORT-ROOT-LIKE 41 450 - -
Lja3g4981 455 ProSiteProfiles GRAS family profile. 58 450 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4981 Lja-Chr3 91973073 91975059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4981 44 451 GRAS Transcription Factor Family AT4G37650 50.930 2.26e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g4981 GRAS 4.5e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4981 - - gmx:100818806 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4981 3 91973073 91975059 Lja3g4981 3 91973073 91975059 ECH
Lja3g1592 3 17457394 17459463 Lja3g4981 3 91973073 91975059 PCT