Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4974 ATGGCACATCAGAGCAAATCGGCGCCGGAATACCACGACTGCGGGGGCCCTTCCAACAACCTCCGGGTCGGAAATCTCTCGCACTCGACAGCGTCACCTCCTATTCCTCTCGGAGTTACGCTTTCGTCTTCTTCAACCGCGTCGAAGACGCTAAAACCACATCGCAAGGTTCTCCTCTTCGCGGATTCACCATCAGAATCGAGTTCGCAAAACCTGTTTGAAAAACTGTGTAAGAATCTATGGATTGGTGGTGTGAGTTCCACTGTGGCGAAGGAAGAATTGGAGGTGGAGTTTCGCAAGTTTGGTGATGTTGTGGAGTTTAGGTTCTTCAGAGACCGCAACACTGCCTGTGTTGAGTTTCCTGATTTGGAGGATGCTACTCGGGGCATGAAAGTCATGAACGGGAAGCGTTTAGGCGGCGGTCAGATTCGCGTCGACTTCCCCCGGTCACAATCTACAAAGAAAGTGGATTGTGTTATTTCCATTTCAACCTCTGCCAATGGATACATTTGGTCATAA 519 0.499 MAHQSKSAPEYHDCGGPSNNLRVGNLSHSTASPPIPLGVTLSSSSTASKTLKPHRKVLLFADSPSESSSQNLFEKLCKNLWIGGVSSTVAKEELEVEFRKFGDVVEFRFFRDRNTACVEFPDLEDATRGMKVMNGKRLGGGQIRVDFPRSQSTKKVDCVISISTSANGYIWS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4974 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 143 IPR000504 GO:0003723
Lja3g4974 172 PANTHER RNA RECOGNITION MOTIF-CONTAINING 74 157 - -
Lja3g4974 172 Gene3D - 61 158 IPR012677 -
Lja3g4974 172 SMART rrm1_1 79 146 IPR000504 GO:0003723
Lja3g4974 172 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 74 157 - -
Lja3g4974 172 MobiDBLite consensus disorder prediction 1 29 - -
Lja3g4974 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 150 IPR000504 GO:0003723
Lja3g4974 172 SUPERFAMILY RNA-binding domain, RBD 69 152 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4974 Lja-Chr3 91925742 91929323 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4974 - - gmx:100795342 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4974 3 91925742 91929323 Lja3g0594 3 5818699 5829122 PCT