Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4972 ATGGATAAGGACAAATCTGTGGGTCATGGCGGTGGTTTGCCACCTCCGCCAGGTCGTTATTCCGGTTACTCACCCCCCGGAACCGCCTTCAATGTGAAATCTGAACCACCGGCGGGAACGTCGTCGTATCCGCAACTGGTTCCGGGTACCAGCTCAGACGTGAATACTCATTTTGGACATGGAATGTCCACCGGTGCGGCGGATTCGAGTGGATTTAGCCATGATATTAGCAGAATGCCGGATAATCCTCCGAGGAATCGAGGTCACAGGCGTGCTCATTCGGAGATTCTCACTCTGCCTGATGATATTAGCTTTGACAGTGACCTTGGTGTGGTTGGTGGTGCTGATGGGCCCTCTTTCTCGGATGACACTGAGGAGGACTTGCTATCCATGTACCTTGATATGGATAAATTCAACTCATCGTCCGCTACATCGTCGTTTCAAATGGGTGAGCCGTCTAATGCGGGAGGGCCGTCAGGTTCGATGCCAGGGCAAGGCTTTTCTGCACAGAACATTGCTGTTGGTGGTAGTGAAAGGAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGGTCAACTTCCATTAAACCTGAGATGCTAGTGTCGGGTTCGGATGAGATGTCTGGAGTTGACTCCAAGAAAGCTATGTCGGCTGCCAAGCTTGCAGAACTTGCCTTGATTGACCCCAAGCGCGCAAAAAGGATATGGGCCAACAGGCAGTCTGCTGCGAGGTCAAAAGAGAGGAAGATGCGTTACATAGCTGAACTTGAACGGAAGGTGCAGACATTGCAGACAGAAGCAACGTCTTTGTCTGCACAATTAACTCTCTTGCAGCGGGATACAACCGGACTTAATTCTGAAAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTAAACGATGCGTTAAAAGAGGAAATTCAGCATTTGAAAATACTGACTGGGCAAGCTATGCCACCTAATGGAGGAGGACCTATGATGAACTATGCTTCTTTTGGAGGGGGCCAGCAGTTCTATCCCAATAATCACAGCATGCACACTCTTTTAGCTGCTCAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAGCACCAGCAGCACCAGCATCAATTTCAGCAACAAATTCAACAGCAACAGCAACAGCAGCAGCAACAAATACAACAGCAACAGCAACAGATGCAGCAGCAGCAGCAGGAACAACATCAACAATCAGGGGACTTGAAAATGAGATCAGCTACATCTTCTCCTTCCCCCAAAGATAACGATTCACCAGATCTAAATCCTTCTACGGCCAAGGATTGTTGA 1332 0.4887 MDKDKSVGHGGGLPPPPGRYSGYSPPGTAFNVKSEPPAGTSSYPQLVPGTSSDVNTHFGHGMSTGAADSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSSFQMGEPSNAGGPSGSMPGQGFSAQNIAVGGSERRVRHQHSQSMDGSTSIKPEMLVSGSDEMSGVDSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTTGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGGPMMNYASFGGGQQFYPNNHSMHTLLAAQQFQQLQIHPQKHQQHQHQFQQQIQQQQQQQQQQIQQQQQQMQQQQQEQHQQSGDLKMRSATSSPSPKDNDSPDLNPSTAKDC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4972 443 MobiDBLite consensus disorder prediction 396 443 - -
Lja3g4972 443 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 390 - -
Lja3g4972 443 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 390 - -
Lja3g4972 443 MobiDBLite consensus disorder prediction 34 71 - -
Lja3g4972 443 SMART brlzneu 226 290 IPR004827 GO:0003700|GO:0006355
Lja3g4972 443 Coils Coil 381 415 - -
Lja3g4972 443 Pfam bZIP transcription factor 230 288 IPR004827 GO:0003700|GO:0006355
Lja3g4972 443 MobiDBLite consensus disorder prediction 141 197 - -
Lja3g4972 443 Gene3D - 229 283 - -
Lja3g4972 443 Coils Coil 246 315 - -
Lja3g4972 443 MobiDBLite consensus disorder prediction 80 97 - -
Lja3g4972 443 CDD bZIP_plant_RF2 231 280 IPR044759 GO:0003700|GO:0006355
Lja3g4972 443 SUPERFAMILY Leucine zipper domain 230 282 IPR046347 GO:0003700|GO:0006355
Lja3g4972 443 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 228 291 IPR004827 GO:0003700|GO:0006355
Lja3g4972 443 MobiDBLite consensus disorder prediction 1 98 - -
Lja3g4972 443 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4972 Lja-Chr3 91910729 91914839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4972 19 360 bZIP Transcription Factor Family AT1G06070 71.429 2.74e-165 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g4972 bZIP_1 4.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4972 - - lja:Lj3g3v0370510.1 614.764