Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4968 ATGAAGATTCAATGTGATGCATGTGAGAAAGCTCCGGCTACTGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTCAGTGTGATGTTGAGATTCATGCTGCTAACAAGCTTGCTAGCAAGCACCAGAGGCTTCTTCTTGAAAGTCTATCAAACAAGCTTCCAAAGTGTGATATATGTCAGGAAAAGACAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATGCACCTGGAAGCATCTCTGCGAACCACCAGCGCTTCCTTGCTACCGGTATCAAAGTAGCAGGGAGTTCAAAATGCACCAAAGATGATGAAAAAAGCCACTTGGAGCCACCTAGTAGGAATGCATCTAAAATTTCTGCAAAAATTCCTCCTCAGCAAGTGCCTAACTTCACTGAAAAAATTCCTCCTCAGCAAGTGCCTAACTTCACTGAAAAAGTTCCTCCTCAGCAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGATATGGAGTTATCAAGCTTTGATTCCCCTGATAAATATGCTCAGAAGGACTCTCTGCAGTTTGGAGAGCTAGAATGGCTTGCAGATGATGGTCTTTTTGGTGACCAATTTTCTCAGGAAGCATTGGCTGCAGCTGAAGTCCCTCAGCTTCCAGCAACTTATACCAGCAGCAATGTTGCTTCCTACCGAACCTCCAAATCCCCCATGTCAAACAAAAAGGCTAGGATTGAAGTCCTACATTATGATGAAGATGATGATGAGTACTTCACTGTGCCTAATCTTGGCTGA 813 0.4367 MKIQCDACEKAPATVICCADEAALCAQCDVEIHAANKLASKHQRLLLESLSNKLPKCDICQEKTAFIFCVEDRALFCQDCDEPIHAPGSISANHQRFLATGIKVAGSSKCTKDDEKSHLEPPSRNASKISAKIPPQQVPNFTEKIPPQQVPNFTEKVPPQQVPNFTSSWAVDDLLDMELSSFDSPDKYAQKDSLQFGELEWLADDGLFGDQFSQEALAAAEVPQLPATYTSSNVASYRTSKSPMSNKKARIEVLHYDEDDDEYFTVPNLG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4968 270 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lja3g4968 270 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lja3g4968 270 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja3g4968 270 Gene3D Classic Zinc Finger 1 95 - -
Lja3g4968 270 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lja3g4968 270 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lja3g4968 270 MobiDBLite consensus disorder prediction 108 122 - -
Lja3g4968 270 MobiDBLite consensus disorder prediction 108 128 - -
Lja3g4968 270 CDD Bbox1_BBX-like 5 47 - -
Lja3g4968 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 146 270 - -
Lja3g4968 270 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 144 - -
Lja3g4968 270 CDD Bbox1_BBX-like 56 98 - -
Lja3g4968 270 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lja3g4968 270 PANTHER B-BOX ZINC FINGER PROTEIN 24 146 270 - -
Lja3g4968 270 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4968 Lja-Chr3 91885463 91888360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4968 1 195 Orphan Transcription Factor Family AT1G06040 57.576 5.94e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lja3g4968 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4968 - - lja:Lj3g3v0381570.1 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4968 3 91885463 91888360 Lja3g0598 3 5875920 5879236 PCT