Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4959 ATGGGAGGTGGGGACGATTTCCGGCGCCGTCGTGAGTTATACTCCACATATGAACAGCAGCGAATCCATGGGGAGACAAGTATAGATGATCGATCAAAGGAGGTGACTTTGTTCATTGACGGTCTGGGCGAACAAACAACGTACCGACACATCAAGAACATGTTTTCACCAATAGGCACGATTGTAGGGATTTTTGTTCAGAGATTTAAGAAGAGTCACCGTGCTCATAAGTTCGGTTTTGTTAGGTTCTCATCGAAGAAAGAGGCTACACTAGCCATCAAATCATTCAACGGAAAGAATGCTTTTGGTTCCTACCTTAAAGTTTCATTGGCCAGATATCCTTTCAATTTCCCAGGGGAGAAAAGACAGGTCAACTCAACCAGAGATAAAAGGCACGGAAGCAATAGACAGAGCAGATTTCCTGGGCCTTTTTATGAACAGAAAATGAAACAGAGGCCTTTTTACGAACAGAAAATGAAACAGAGATGGATCCCCAAGGAGGATAGAACGTGCCCCTCACAGAAGGAAGACAATGTCCAAGATCCCGATACTCCTCCGATGGAGGAAATGAAAGAATGGTTAGATAGAATCCTCATCGGATCCTTGAGAGGAACTTTCAATATGGACTCAGTGCAGTCTTTCCTTGACGCTCTGAGTTCCTCCAAAGTTCGAGCTAAGCCATGGGGTGCAAGCGAAATCATACTGGAGTTTCAAAATAGTAGTGAGAGGTCGCTTTTTCTGGCAAATGAAGGAAGGGCATCTGCTCACTTTTTCGAACTGTTGAGAACTCCGCTTTCCCACTCGGTTCCCCCATCTCATTTCATTTGGGTCAAGATCAGAAATGTACCACTGGGTGCATGGTGCGAAGAATTCTTTAGGCTAGTTTCCTATTCGGTGGGTTCTCTCATCTGCCTCGATGAGAGGACGAAGAACAGGGAAAGGCTGGATGTGGCCAGATTACTAATCAAATCCCCCTCAGCCTTTCTCCCCTCAAAGAGCTACGAAGTCCAGTTTCACAACATCAAAGCTCGGATTACCATGGAGATGGATGCTAGCTACGACTTTAGAATTAACCGGAATGTCGAAGACGATCCATTCGAAGGGGAATCGTCTTTACAAGAAGCAAACCATGGTGGTGAGGATTCAGGGGGTACCATCGTCGCAGAAACGGAATCCATTAGTGAGGCCAGCGAACCCTCACAGCGGCCGGAATCAGACACGTACGACTTAGAGGTGGTTTCCGAGCGGCACATCGTGATCTCCGATGACCTGCAAAACTGTCAGTGTACAGTGGGATCCCATTGGTCGAAAGACTATACTCATGGGACCCTTCAATGGGTCAACCCAGGGAACCAATCTACTTTGGGGATCAGCAACCACACACTTTCTATGCCCAGGAATTTGACTATCTCACGAGGGGAATCTGTATCCAGTATCATCAACCTAGGGAGGGATGTATACATCAAAATAACAAATGCAGGTTACGAAGGCTCACCATACTGGCCCCCTCCCCTTTTTGAGGTATTTTTTCAAAATATGATAAACATCAGGTCAACTCTGAGGGCCCCACTTGATGCCATACGTGTGCAAAGTCTTAACCCTATTCCCACCGCACAAAGGGTGCCACAATTTCTGTTAGGTTGGAGTGATGGTAATGGGCCGGATGCGAATGGCCCATCTAAATTACTTGTGGTTGGCCCGGAACTAAACCCTGAACCACATCCTGAAGCAGCCCCAACGAAGAGAGGCAGGGGACGACCCAGAAAATCCCTTCCTCCCCTTCAGAAATCCTCTGCACCATTATCCAATCAATTGGCCCCTCCCACCTTTGCTTCCTCATCCTCTCGGCGTGTATGTAGGGTGGTGTCTCCGGCCACATCGCCGCCCTCTTCTGTGGACCATTCTGATGAAGCTGACCTGATACTTTCTCATCAACAAATCATCCGTGGTAGAGGCACTGACACCAGATTCAACAGAGCTAAGGAAGCATGGGTACTCGCGAAAGCTATGGGTCTTGAGTTCCCAGGTACTGACGAACTAGCGATTCAGGGGCTGGAGTTGGAGTTGGATAGAATCATAGCTGACCGATAG 2091 0.4768 MGGGDDFRRRRELYSTYEQQRIHGETSIDDRSKEVTLFIDGLGEQTTYRHIKNMFSPIGTIVGIFVQRFKKSHRAHKFGFVRFSSKKEATLAIKSFNGKNAFGSYLKVSLARYPFNFPGEKRQVNSTRDKRHGSNRQSRFPGPFYEQKMKQRPFYEQKMKQRWIPKEDRTCPSQKEDNVQDPDTPPMEEMKEWLDRILIGSLRGTFNMDSVQSFLDALSSSKVRAKPWGASEIILEFQNSSERSLFLANEGRASAHFFELLRTPLSHSVPPSHFIWVKIRNVPLGAWCEEFFRLVSYSVGSLICLDERTKNRERLDVARLLIKSPSAFLPSKSYEVQFHNIKARITMEMDASYDFRINRNVEDDPFEGESSLQEANHGGEDSGGTIVAETESISEASEPSQRPESDTYDLEVVSERHIVISDDLQNCQCTVGSHWSKDYTHGTLQWVNPGNQSTLGISNHTLSMPRNLTISRGESVSSIINLGRDVYIKITNAGYEGSPYWPPPLFEVFFQNMINIRSTLRAPLDAIRVQSLNPIPTAQRVPQFLLGWSDGNGPDANGPSKLLVVGPELNPEPHPEAAPTKRGRGRPRKSLPPLQKSSAPLSNQLAPPTFASSSSRRVCRVVSPATSPPSSVDHSDEADLILSHQQIIRGRGTDTRFNRAKEAWVLAKAMGLEFPGTDELAIQGLELELDRIIADR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4959 696 Gene3D - 9 154 IPR012677 -
Lja3g4959 696 MobiDBLite consensus disorder prediction 549 635 - -
Lja3g4959 696 MobiDBLite consensus disorder prediction 595 633 - -
Lja3g4959 696 MobiDBLite consensus disorder prediction 365 385 - -
Lja3g4959 696 MobiDBLite consensus disorder prediction 166 186 - -
Lja3g4959 696 SMART rrm1_1 36 109 IPR000504 GO:0003723
Lja3g4959 696 CDD RRM_SF 37 109 - -
Lja3g4959 696 SUPERFAMILY RNA-binding domain, RBD 34 141 IPR035979 GO:0003676
Lja3g4959 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 106 IPR000504 GO:0003723
Lja3g4959 696 Pfam Domain of unknown function (DUF4283) 188 322 IPR025558 -
Lja3g4959 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Lja3g4959 696 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 578 589 IPR000637 GO:0006355
Lja3g4959 696 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4959 Lja-Chr3 91788052 91790142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4959 9 112 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 8.99e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4959 - K13126 lja:Lj0g3v0282289.1 196.823