Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4958 ATGAGCCCAACTTCCCTAGTCCACAACTCCACGCTCTCCATCCATAATCCTCCAGAGAGAGAGAGAGAGAGAGAGAAAGAGGCGCAAACACAGAGAGAACGAAAAAAGGAGAAAAATCCCAACCCGCCAAACGCGAAACCCTTTCTATCGCGATTTCTCGCGGAGGAGAATTATTCAGAAATGACACAGCCATCGGTTCCCACGCCACCGCCGCCTCTTCCACCACCGCCTCCGCCGTCCGATATTCGCGTCCGCTGTGCCGGCTGCCGCATGATCCTTGCCGTCGCGCCTGGGCTGACGGAATTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCTGAACTCATGCCACCTAGGGCCGACCAAACCGCCACCGCAACAACCACATCGCCGCTTCCTGCTCCTCCTGCTTCTTCCGCGCCGGCGCACGGCATTGATCCTACCAAGATCCAGCTTCCCTGCGCTAACTGCAAGGCTCTTCTCAACGTCCCTCATGGCCTCTCACACTTCTCTTGTCCTCAATGTGAGGTTAACCTCGCCGTCGATCTCTCCAAGGTTAAACAGTTTCTCCCCTCCGCTCCTCCTCCCGAAGAAGTTAACGAGGTTGCTGTTGATGTTGAGCGGGATGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGACCTCCACACCCTGATCCTGTTGTGGAGACTTCTTCCTTGGCTGCGGTGCAGCCACCTGAGCCTACTTATGACCCAAAAACTAGAGATAATTTGGAAAATTCGAAGTCTTTATCATGCCTGCAAATTGAAACATTGGTCTATGCTTGTCAGAGGCACCTTCAACACCTCCCTGGTGGAGCTAGGGCAGGTTTCTTTATTGGTGATGGAGCTGGTGTTGGTAAAGGTCGAACAATTGCAGGTCTAATTTTGGAGCACTGGCACCACGGAAGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTCGATGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGCCTTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGAGTCAAGGAGGGAGTTGTTTTCTTGACTTACAATAGCCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAACAGCTTGTACAGTGGTGCGGACCAGGGTTTGATGGTCTTGTAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGAAGTCAGCCAACACGAACTGGAGAAGCCGTGCTTGAAATCCAGGATCGACTACCGGAAGCACGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCTCGCAACATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGCTGGGACTTCTTTTTCTGATTTCCGTGAATTTTTAGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCGATGGACATGAAAGCAAGGGGAATGTATTTATGTCGAACTCTTAGCTACGAGGGTGCTGAGTTTGAAGTTGTTGAAGCACCATTAGAAGATAAAATGATGAACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTCTCAGCCAGTGCCTTCTTAAATGATAAACCTAATTCTAGTCAAGTTTGGAGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGTCACATGTGCATGTCTGCTAAAGTCCCTGCTACTGTGAGGCTAGCGAAACAAGCTTTAAGTGAAGAAAAGTGTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTCGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTATCCGTTGCCTGAAAAACCTGAACTTCTCCCAGGGGAAGGGGAGGATGGGGTTAAGGAGCTCCAACGGAAGAGGCACTCTGCCACTCCTGGTGTTTCATTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTTGCAGCCACCTAGTGATGCTGAAAGTGATGAAGAATCCGAAACTGACTCTGGTATTGAATCTACTGACTCTGATGATGAATTTCAGATATGTGAAATCTGCACTACTGAGGAGGAAAAGAAAAAAATGCTACAGTGTTCCTGCTGTGGTAAATTGGTCCATTCCTCTTGCTTGATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTATGTAAGGAAAAAACAGATGAATATCTTCTAGCAAGACAAGCCTACATAGCTGAACTCCAGAAGAGGTATGATGCAGCCTTGGAACGTAGGACCAAAATATTAGAGATTATTCGTTCTTTGGACCTTCCAAATAATCCTTTGGATGATATTATTGACCAGCTGGGTGGCCCTGACAAAGTTGCAGAAATAACAGGAAGGAGAGGCATGCTCGTGAGGGCCTCTACTGGAAAGGGTGTTACTTATCAAGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAATATGCATGAAAAACAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCGGGCGTTTCTTTGCAGGCAGATAGAAGAGCTGGAAATCAGAAAAGAAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACAGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATATAGGATACTCTTTACTAATCTTGGTGGAGAACGACGATTTGCATCAATTGTTGCAAAGAGATTAGAATCCCTTGGGGCTTTGACTCAGGGGGATCGCAGGGCTGGACCTTCGTTAAGTGCTTACAATTACGACAGTGCTTACGGAAAGAGGGCTCTGGTGATTATGTACAAAGGAATAATGGAGCAGGACTCTCTACCTGTTGTACCTCCAGGATGTTCATCTGACAGACCAGATACAATTAAAGATTTTATTGCACAGGCAAAAGCTGCTCTTGTATCTGTTGGTATAGTTAGGGACACAATTCTTGGTAATAATGGTAAAGATCTTGGAAGGTTATCTGGTCGCATAATTGATTCAGATATGCATGAAGTTGGACGATTCCTCAACCGGCTTTTGGGACTACCTCCTGATATTCAGAACGGGCTGTTTGAGTTATTTGTGAGTATCTTGGATCTTCTCATTCGAAATGCTCGAATTGAAGGTAACCTTGACACCGGCATTGTTGACTTGAAAGCCAATGTCATTGAACTACAGGGGACGCCAAAGACAGTTCATGTTGATCAAATGACTGGGGCTTCAACAGTTCTGTTTACATTCATCTTGGATCGTGGGATCACGTGGGAGTTGGCAAGTAACATGCTGAATGAAAAGCAGAAGGACGGGCTTGGTTCAGCCCATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATTTTATTTTAGCATTTGAAAGTTCTGCTTCTGGTATGTATAAGATTGTTCGTCCTCCCGTTGGAGAATCAAACCGGGAGATGCCACTGTCTGAATTAAAAAGTAAATATAGAAAAATCTCATCTTTAGAGAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAAATGTAAGATTGGCGACTTCTGTACAGTTGGCAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAACCATAGAAAAGGCTCTTGCTAAGCAGGCCCGCCTTAGCCATAGGAGGCTTCGTGTTGTACGCATTGAGACTACTGTGGATAACCAACGTATTGTTGGGCTTCTTGTTCCTAATTCAGCTGTCGAAACTGTGCTTGAAGGTTTAGCATGGGTAGAAGAAATTGATGATTGA 3951 0.4548 MSPTSLVHNSTLSIHNPPEREREREKEAQTQRERKKEKNPNPPNAKPFLSRFLAEENYSEMTQPSVPTPPPPLPPPPPPSDIRVRCAGCRMILAVAPGLTEFACPTCRMPQMLPPELMPPRADQTATATTTSPLPAPPASSAPAHGIDPTKIQLPCANCKALLNVPHGLSHFSCPQCEVNLAVDLSKVKQFLPSAPPPEEVNEVAVDVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLAAVQPPEPTYDPKTRDNLENSKSLSCLQIETLVYACQRHLQHLPGGARAGFFIGDGAGVGKGRTIAGLILEHWHHGRRKALWISVGSDLKFDARRDLDDVGATCLEVHALNKLPYSKLDSKSVGVKEGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGAGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVVEAPLEDKMMNMYKKAAEFWAELRVELLSASAFLNDKPNSSQVWRLYWASHQRFFSHMCMSAKVPATVRLAKQALSEEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEGEDGVKELQRKRHSATPGVSLKGRVRKVAKLQPPSDAESDEESETDSGIESTDSDDEFQICEICTTEEEKKKMLQCSCCGKLVHSSCLMPPIGDIVPEEWSCHLCKEKTDEYLLARQAYIAELQKRYDAALERRTKILEIIRSLDLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRASTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAGNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALVIMYKGIMEQDSLPVVPPGCSSDRPDTIKDFIAQAKAALVSVGIVRDTILGNNGKDLGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGLFELFVSILDLLIRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQMTGASTVLFTFILDRGITWELASNMLNEKQKDGLGSAHDGFYESKREWLGKRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQTGWEEEYEVSSKQCMHGPKCKIGDFCTVGRRLQEVNVLGGLILPVWGTIEKALAKQARLSHRRLRVVRIETTVDNQRIVGLLVPNSAVETVLEGLAWVEEIDD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4958 1316 ProSitePatterns Zinc finger PHD-type signature. 717 761 IPR019786 -
Lja3g4958 1316 SMART PHD_3 716 762 IPR001965 -
Lja3g4958 1316 ProSiteProfiles Zinc finger PHD-type profile. 714 764 IPR019787 -
Lja3g4958 1316 PANTHER OS08G0223700 PROTEIN 79 1316 - -
Lja3g4958 1316 Gene3D - 261 465 IPR027417 -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 218 237 - -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 1 79 - -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 648 709 - -
Lja3g4958 1316 SUPERFAMILY FYVE/PHD zinc finger 708 766 IPR011011 -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 15 41 - -
Lja3g4958 1316 PANTHER STRAWBERRY NOTCH-RELATED 79 1316 IPR026741 GO:0006355
Lja3g4958 1316 MobiDBLite consensus disorder prediction 694 709 - -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 64 79 - -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 118 146 - -
Lja3g4958 1316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 773 IPR013083 -
Lja3g4958 1316 Pfam P-loop containing NTP hydrolase pore-1 235 535 IPR039187 -
Lja3g4958 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 860 965 IPR027417 -
Lja3g4958 1316 Pfam PHD-finger 716 764 IPR019787 -
Lja3g4958 1316 Pfam C-terminal domain on Strawberry notch homologue 805 1095 IPR026937 -
Lja3g4958 1316 MobiDBLite consensus disorder prediction 652 669 - -
Lja3g4958 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4958 Lja-Chr3 91762372 91781754 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g4958 AAA_34 6.4e-133 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4958 - - gmx:100804594 2159.03