Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4954 ATGGCATCAAAGCCTGTTGAAATGCCTGATTTACTTGATACGAATAACAACAATTCATCAGAAAAAATCCTCAAGACTGATGCAAACTTGGCAAATGACTCAGGAGGTCATGCACAGATAGACCAAGTTTCTAAAAACAATGCAAAGATGACAACAACAAGTAAACCATCATCTAGACCTCAGAGACTGGAACCATCCATGAGGAACATGTCTGAATTCTCCACAGCCTCATCTGCAAGGGGGTTTCATACAAAGAACCATGGCTACAGGAGCGGATCTAGCTCCCGCAGCGACAGTTTAGAGAGCACAAGTGCACCGATTAAGCCCCACACCGGAGGCGATGTGAGGTGGGATGCAATTAACATGGTTTCCAAGGGCTTTAGTCTTAACCTTAGCCAGTTTAGGCTTCTGAAGCGTGTAGGGTACGGAGACATTGGAAGCGTGTACCTTGTGGAGCTTAAAGGAACTAGGACCTTCTTCGCCATGAAAGTGATGGATAAGGCGTCTCTTGCAAGCAGAAACAAGCTTCTGAGAGCACAGACAGAGAGGGAGATTCTTGGACTTCTTGACCACCCTTTCTTGCCCACTTTATATTCTTATTTTGAGACTGAGAAGTATTACTGTTTGGTCATGGAGTACTGTAGTTGTGGCAGTTTGCATTCCCTTCGATTGAAGCAACCTAACAGGCATTTCACCGAAGAAGCTGCACGGTTTTATTGTTCAGAGATCTTGTTAGCACTGGAGTACCTTCACATGCTCGGCATCGTCTACAGAGACCTAAAACCAGAGAACGTCCTAGTCCGCGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCCCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGCACACGTCAGCACCACCACCGGCGTCATAGACGACGGCAACCACCAAGTCCAAAGCTGCATGCAACCCTCAAGCTTCTTCCCACGCATCCTCCCCTACAAAAAGAATCGCAAATCCAAATCCGACTTCGGCCTCATGGTCGGCGGCCGTCTCCCGGAGCTCATGGCGGAGCCGACGAACGTCCGGTCAATGTCGTTCGTCGGAACTCACGAGTATCTCGCGCCGGAGATTGTTCGCGGCGAGGGGCACGGAAGCGCGGTGGATTGGTGGACATTCGGAATATTCCTCTACGAGCTTCTTCATGGAACGACGCCGTTTAAGGGCGCTGGGAATCGTGCCACGCTTTTCAATGTGGTGGGCCAGCCTTTGAGGTTTCCAGAAGATTCGAATTGTCATGTGAGTCATGCAGCGAGGGATCTTATTAGAGGGTTGTTGGTGAAAGAGCCTCATAAGAGGATTGCTTATAAGAGAGGTGCTACTGAGATTAAGCAACATCCTTTTTTTGATGGGGTTAATTGGGCTCTTATTAGAAGTGCTACACCTCCTATTATACCTGAAACTGTTGATTTTTCACAGTATTTGAGCAACCAAACTGTGGCTGCTGATAAGAAGATGGCTGAGATTGTGAGTGAACAAAATACTACTACCAATGCTGAACAACCTGATTCTTATGAAGATTTTGAGTATTTCTAG 1578 0.4797 MASKPVEMPDLLDTNNNNSSEKILKTDANLANDSGGHAQIDQVSKNNAKMTTTSKPSSRPQRLEPSMRNMSEFSTASSARGFHTKNHGYRSGSSSRSDSLESTSAPIKPHTGGDVRWDAINMVSKGFSLNLSQFRLLKRVGYGDIGSVYLVELKGTRTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKYYCLVMEYCSCGSLHSLRLKQPNRHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHVSTTTGVIDDGNHQVQSCMQPSSFFPRILPYKKNRKSKSDFGLMVGGRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGNRATLFNVVGQPLRFPEDSNCHVSHAARDLIRGLLVKEPHKRIAYKRGATEIKQHPFFDGVNWALIRSATPPIIPETVDFSQYLSNQTVAADKKMAEIVSEQNTTTNAEQPDSYEDFEYF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4954 525 SUPERFAMILY Protein kinase-like (PK-like) 126 494 IPR011009 -
Lja3g4954 525 Gene3D Transferase(Phosphotransferase) domain 1 218 287 - -
Lja3g4954 525 ProSiteProfiles Protein kinase domain profile. 134 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4954 525 CDD STKc_phototropin_like 132 484 - -
Lja3g4954 525 Gene3D Transferase(Phosphotransferase) domain 1 337 481 - -
Lja3g4954 525 Pfam Protein kinase domain 355 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4954 525 Pfam Protein kinase domain 135 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4954 525 Gene3D Phosphorylase Kinase; domain 1 132 217 - -
Lja3g4954 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Lja3g4954 525 SMART serkin_6 134 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4954 525 MobiDBLite consensus disorder prediction 1 111 - -
Lja3g4954 525 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 26 525 - -
Lja3g4954 525 ProSiteProfiles AGC-kinase C-terminal domain profile. 464 525 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja3g4954 525 PANTHER FLIPPASE KINASE 1-RELATED 26 525 - -
Lja3g4954 525 MobiDBLite consensus disorder prediction 10 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4954 Lja-Chr3 91720185 91723232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4954 100 525 AGC Kinase Gene Family AT1G79250 72.000 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g4954 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4954 - - gmx:100802478 732.25