Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4934 ATGGACTCTTACTTACCTCACCAATTTGAATCTTGCCCAGAATTACTTGACAGGTTCTCTACCTCCAGCCATTGGAAATCTGACTCGCATGGAATACATGACCTTTGGCATCAATGCTTTATCAGGGGAGCTTCCCAAGGAATTGGGATATCTTACCGACTTAAGATCATTGTTTACTATTTGTTAATTTGCAGGAGTTATGGATCAAACAACTTCTCAGGATCTTTTCCATCTGAACTGGGGGATCTGGTAAAATTAGAACAACTCTACGCTGCTAGTTCGGGAATTAGTGGTCCAATTCCTCCCACATTTGCAAAGCTTAAGAATTTGTTGATAGTATGGGCTTCAGACATGGAACTCACAGACAATATACCTGATTTCATAGGGAGTTGGTCTAAGCTTCAGACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCGAATACCGTCATCATTTTCCAATTTGACTTCTTTAACAGAGTTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTCTTACGGAATATGAAGTCTTTAACTATCTTAGAACTGCGGAATAACAATATTTCTGGTTCCATTCCATCCACCATTGGTGAATTACAAAATTTGACCCAGTTGGATTTAAGTTTCAATAACTTCTCAGGACAAATTCCCGGATCAATTTTCAACTTGAGTTCGCTCTCTTTCTTGTTTCTTGGAAATAACAAACTTAATGGCATAGTCCCTACGCAGAAAAGTTCATCTCTTCTCAATATAGACTTGTCATACAATGATCTAACAGGGAGCTTCCCCTCTTGGGTAAATGAACAAAATTTACAGCTGAACTTAGTGGCCAACAACTTCACAATTGAAAATTCAAATAGCAGTGGTTTGCCTACTGGGCTTAACTGTCTCCAGAAAAATTTTCCTTGCAATAGTGGTGCTGGAAGATATTCTGATTTTACCATCAAGTGTGGTGGTCCCCAAATTACATCCGTAGATGGAACTGTGTATCAAATGGATAATGACACACTTGGTCCTGCTAAATACTTTGTTACTGATACAAATAGATGGGCCGTTAGTAATGTTGGGTTATTTACTGGGAACAATAATCCTCTATACAAAAGTTTTGTGTCTAATCAGTTCACCGGTACTTTGGACACAGAGCTCTTCCAAACAGCCCGACTCTCTGCATCATCACTAAGATATTATGGCCTGGGGCTGGAAAATGGCTTTTACAACATCACCCTCCAATTTGCAGAAACAGCTATTCTGGATTCTACCACGTCCACATGGAAAAGCCGTGGGAGACGGGTTTTTGATATTTATATCCAGGGTACTCGTGTTTTGAAGGATTTTAACATACAAAAGGAAGCTGGGGGCGTCTCTTACAGAGCTGTCCTCAAACGATTCAGGTTTGAAGTGAAAGAAAACTATCTGGAGATTCATCTCTTTTGGGCTGGGAAAGGGACTTGCTGCATACCTGCTCAAGGTACATATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTCATCCCAACTGTCAGTAACAAACCTCCAAGCAGTGGAAATAGTAAAACTGGTCTAATCATTGGTATTGTTGTGGGTGTTGGAGTTGTAAGCTTTCTGTCAATTTTTGCTGTTTTCTATTTCATTCAGAGAAGAAAGCGCCTTCTTGATGATGAAGATCTTTTAGGTATGGATACAAAGCCATACACTTTTAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTCAATATTGACAACAAGCTTGGAGAAGGAGGTTTTGGACCTGTTTATAAGGGGATACTCAATGATGGAACAGTTATTGCTGTGAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCGACTATATCTGCTGTACAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGGCTTCTTGTCTACGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATATGGAAAAGTTTTATCCCTCAACTGGTCCACGCGCTACGATATATGCTTGGGTGTTGCACGAGGTTTAACTTATTTACATGAAGAGTCACGACTCCGTATTGTACACCGTGATGTGAAGGCTAGCAATATTCTGCTTGATCATGAGCTGGTCCCGAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGATAAAAAGACCCACATAAGCACTCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTTTTTTCCTTTGGGGTTATGGCTCTAGAGTTAGTTAGTGGGAGGCCAAATTCTGATGCAAGTTTGGAAGGAGAGAAGATATATCTTCTGGAATGGGCTTGGCAGCTTCATGAAAAAAACAGCGTAACTGATCTGGTAGATCCTGGACTCTCCGAATTCAACAAGGAAGAAGCAAGACGCGTTGTGGGAATAGCACTTTTGTGCACTCAAACATCGCCATCTTTGCGGCCATCAATGTCGCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGTACTGTAACTTCAAGGCCAGGATACTTGACTGACTGGAAATTTGATGATGTGTCCAGCTTTATGACCGACATTACGACCAAAGCAACAGATGGAAGTTATTACAATTCAACAGCAAGTACCAGCATGGTTGGTGGTGCAGACCATTCACCAATAGATCCTTCTACAGCTATACTTCATGATCTGAATGATGGTAGGTGA 2772 0.4069 MDSYLPHQFESCPELLDRFSTSSHWKSDSHGIHDLWHQCFIRGASQGIGISYRLKIIVYYLLICRSYGSNNFSGSFPSELGDLVKLEQLYAASSGISGPIPPTFAKLKNLLIVWASDMELTDNIPDFIGSWSKLQTLRFQGNSFEGRIPSSFSNLTSLTELRISGLSNGSSSLEFLRNMKSLTILELRNNNISGSIPSTIGELQNLTQLDLSFNNFSGQIPGSIFNLSSLSFLFLGNNKLNGIVPTQKSSSLLNIDLSYNDLTGSFPSWVNEQNLQLNLVANNFTIENSNSSGLPTGLNCLQKNFPCNSGAGRYSDFTIKCGGPQITSVDGTVYQMDNDTLGPAKYFVTDTNRWAVSNVGLFTGNNNPLYKSFVSNQFTGTLDTELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTSTWKSRGRRVFDIYIQGTRVLKDFNIQKEAGGVSYRAVLKRFRFEVKENYLEIHLFWAGKGTCCIPAQGTYGPLIQAISAIPDFIPTVSNKPPSSGNSKTGLIIGIVVGVGVVSFLSIFAVFYFIQRRKRLLDDEDLLGMDTKPYTFSYSELKNATNDFNIDNKLGEGGFGPVYKGILNDGTVIAVKQLSVGSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALYGKVLSLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDHELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVMALELVSGRPNSDASLEGEKIYLLEWAWQLHEKNSVTDLVDPGLSEFNKEEARRVVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSSFMTDITTKATDGSYYNSTASTSMVGGADHSPIDPSTAILHDLNDGR* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4934 923 Pfam Protein tyrosine and serine/threonine kinase 585 851 IPR001245 GO:0004672|GO:0006468
Lja3g4934 923 Gene3D Transferase(Phosphotransferase) domain 1 660 862 - -
Lja3g4934 923 SUPERFAMILY L domain-like 69 284 - -
Lja3g4934 923 Gene3D Phosphorylase Kinase; domain 1 549 659 - -
Lja3g4934 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Lja3g4934 923 ProSiteProfiles Protein kinase domain profile. 584 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4934 923 Gene3D - 317 507 - -
Lja3g4934 923 SMART serkin_6 584 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4934 923 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 908 - -
Lja3g4934 923 Pfam Leucine rich repeat 181 240 IPR001611 GO:0005515
Lja3g4934 923 Gene3D Ribonuclease Inhibitor 170 300 IPR032675 -
Lja3g4934 923 Gene3D Ribonuclease Inhibitor 14 169 IPR032675 -
Lja3g4934 923 SUPERFAMILY Protein kinase-like (PK-like) 567 871 IPR011009 -
Lja3g4934 923 MobiDBLite consensus disorder prediction 900 923 - -
Lja3g4934 923 CDD STKc_IRAK 590 851 - -
Lja3g4934 923 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 66 908 - -
Lja3g4934 923 Pfam Malectin domain 317 503 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4934 Lja-Chr3 91417502 91432196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4934 69 909 Receptor kinase-like Gene Family AT1G56120 63.582 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4934 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4934 - - lja:Lj3g3v0397040.2 1792.32