LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4930	ATGCAACGGTGTTGTCTACCACAGATTTTCACTCTCGCACTTGTTGCTGCTCTTTGTGTTAACGTTGCACAAGCTCAAGATGGAAACGCTACTACAGATCCTTCAGAAGCAAGAGTTTTGAATTCAATCTTCAGCAAATGGAGCATTTCAGCAAACCAAGATCAGTGGAATATAAGCGGTGAACTATGCAGTGGAAATGCCATTGATAGCTCCACCAAAATCGATGACACCGCTTACAACCCCTTCATCAAATGCGATTGTTCCTACGACAACAAAACCACTTGCCACATAACAGCACTGAAAGTTTATGCAGTGGACGTGGTTGGAGAAATTCCTGAAGAGCTATGGACTCTTACTTACCTCACCAATTTGAATCTTGGCCAGAATTACTTGACAGGTTCTCTACCTCCAGCTATTGGAAATCTGACTCGCATGCAATACATGACCTTTGGCATCAATGCTTTATCAGGGGAGCTTCCCAAGGAATTGGGAAATCTTGCAGACTTAAGATTATTCGCTTGTGGATCAAACAACTTATCAGGATCTTTTCCATCTGAACTGGGGGATCTGGTAAAATTAGAACAAATCTACGCTGATAGTTCAGGAATTAGTGGTCCAATTCCTCCCTCATTTGCAAAGCTTAAAAATATGCAGCAATTTGCGGCTTCAGACACGGAACTCACAGGCAATATACCTGACTTCATAGGGAATTGGTCTAAGCTTCAAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCGAATACCGTCATCATTTTCCAATTTGACTTCTTTAACAGAGTTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTCTTACGGAATATGAAGTCTTTAACTATCTTAGATCTGAGGAATAACAATATTTCTGGTTCAATTCCATCCACCATTGGTGAATTACGAAATTTGACCCAGCTGGATCTAAGCTTCAATAACATATCAGGACAAATTCCTGGATCAATTTTCAACTTGAGTTCGCTCTCTTACTTGTTTCTTGGAAATAACAAACTTAATGGCACAGTCCCTACGCAGAAAAGCTCATCTCTTCGCAATATAGACTTGTCATACAATGACCTAGCAGGGAGCTTCCCCTCTTGGGTAAACGAACAAAATTTACAGCTGAACTTAGTGGCAAACAACTTCACAATTGAAAATTCAAATAGCAGCGGTTTGCCTACTGGGCTTAACTGTCTCCAGAAAAATTTTCCTTGCAATAGTGGTGCCGGAAGATATTCCGATTTCGCCATCAAGTGTGGTGGTCCCCAAATTACATCCGTAGATGGAACTGTGTATCAAATGGATAATGATACACTTGGTCCTGCTAAATATTTTGTTACTGATACAGATAGATGGGCCGTTAGTAATGTTGGGTTATTTACTGGGAGCAATAATCCTCTATACAAAAGTTTTGTGTCTAATCAGTTCACCGGTACTTTGGACTCAGAGCTCTTCCAAACTGCTCGGCTCTCTGCATCATCACTAAGATATTATGGCATGGGGCTGGAAAATGGATTTTACAATGTCACCCTCCAATTTGCAGAAACAGCTATTCTGGATTCTACCACGTCCACATGGAAAAGCCTTGGGAGACGAGTTTTTGATATTTATATCCAGGGTACTCGTGTTTTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCGTCTCGTACAGAGCTGTCCTCAAGCAATTCAGGTCTGAAGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGGTCAAGGTACATATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTCATCCCAACTGTCAGTAACAAACCTCCAAGCAGTGGAAATAGTAAAACTGGTCTAATCGTTGGTATTGTTGTGGGTGTTGGAGTTGTAAGCTTTCTGTCAGTTTTTGCTGTTTTCTATTTCATTCAGAGAAGAAAGCGCCTTCTTGATGATGAAGATCTTTTAGGTATGGATACAAAGCCATACACTTTTAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTCAATATTGACAACAAGCTTGGAGAAGGAGGTTTTGGACCTGTTTATAAGGGGATACTCAATGATGGAACAGTTATTGCTGTGAAACAACTATCACTAGGATCCCATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCGACAATATCTGCTGTACAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTACGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAAAGCATTATCCCTCAACTGGTCCACGCGCTACGATATCTGCTTGGGTGTTGCACGAGGTTTAACTTATTTACATGAAGAGTCACGACTCCGTATTGTACACCGTGATGTGAAGGCTAGCAATATTCTTCTTGATCATGAGCTGGTCCCGAAATTATCTGATTTTGGTTTGGCCAAATTATATGATGATAAAAAGACTCATATAAGCACTCGTGTGGCTGGGACAATTGGATATCTTGCGCCGGAGTATGCCATGCGTGGACACCTTACCGAGAAAGCAGATGTTTTTTCCTTCGGGGTTATGGCTCTAGAGTTAGTTAGTGGGAGGCCAAATTCTGATGCAAGTTTGGAAGGAGAGAAGATGTATCTTCTGGAATGGGCTTGGAAGCTTCATGAAAACAACAACGTAACTGATCTGGTAGATCCTGGACTCTCCGAATTCAACAAGGAAGAAGCAAGACGCGTTGTGGGAATAGCACTTTTGTGCACTCAAACATCGCCAACTTTGCGGCCATCAATGTCGCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCGCTGTAACTTCAAGGCCTGGATACCTGACCGACTGGAAATTCGATGATGTGTCCAGTTTTATGACTGACATTGCGACCAAAGGAACAGATGCAAGTTATTACAATTCAACAGCAAGTACCAGCGTGGTTGGTGGTGCAGGCTTTTCACCAATAGATCCTTCTACATCTATGCTTCATGATTTGAATGAGGGTAGGTGA	3093	0.4155	MQRCCLPQIFTLALVAALCVNVAQAQDGNATTDPSEARVLNSIFSKWSISANQDQWNISGELCSGNAIDSSTKIDDTAYNPFIKCDCSYDNKTTCHITALKVYAVDVVGEIPEELWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYMTFGINALSGELPKELGNLADLRLFACGSNNLSGSFPSELGDLVKLEQIYADSSGISGPIPPSFAKLKNMQQFAASDTELTGNIPDFIGNWSKLQTLRFQGNSFEGRIPSSFSNLTSLTELRISGLSNGSSSLEFLRNMKSLTILDLRNNNISGSIPSTIGELRNLTQLDLSFNNISGQIPGSIFNLSSLSYLFLGNNKLNGTVPTQKSSSLRNIDLSYNDLAGSFPSWVNEQNLQLNLVANNFTIENSNSSGLPTGLNCLQKNFPCNSGAGRYSDFAIKCGGPQITSVDGTVYQMDNDTLGPAKYFVTDTDRWAVSNVGLFTGSNNPLYKSFVSNQFTGTLDSELFQTARLSASSLRYYGMGLENGFYNVTLQFAETAILDSTTSTWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGVSYRAVLKQFRSEVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAISAIPDFIPTVSNKPPSSGNSKTGLIVGIVVGVGVVSFLSVFAVFYFIQRRKRLLDDEDLLGMDTKPYTFSYSELKNATNDFNIDNKLGEGGFGPVYKGILNDGTVIAVKQLSLGSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGKALSLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDHELVPKLSDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVMALELVSGRPNSDASLEGEKMYLLEWAWKLHENNNVTDLVDPGLSEFNKEEARRVVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSAVTSRPGYLTDWKFDDVSSFMTDIATKGTDASYYNSTASTSVVGGAGFSPIDPSTSMLHDLNEGR*	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4930	1030	Pfam	Protein tyrosine and serine/threonine kinase	692	958	IPR001245	GO:0004672\|GO:0006468
	Lja3g4930	1030	ProSiteProfiles	Protein kinase domain profile.	691	964	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4930	1030	Pfam	Malectin domain	423	610	IPR021720	-
	Lja3g4930	1030	Gene3D	Transferase(Phosphotransferase) domain 1	767	969	-	-
	Lja3g4930	1030	Pfam	Leucine Rich Repeat	240	262	IPR001611	GO:0005515
	Lja3g4930	1030	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	135	1015	-	-
	Lja3g4930	1030	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	810	822	IPR008271	GO:0004672\|GO:0006468
	Lja3g4930	1030	ProSiteProfiles	Leucine-rich repeat profile.	288	310	IPR001611	GO:0005515
	Lja3g4930	1030	SUPERFAMILY	Protein kinase-like (PK-like)	674	976	IPR011009	-
	Lja3g4930	1030	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	135	1015	-	-
	Lja3g4930	1030	ProSiteProfiles	Leucine-rich repeat profile.	312	334	IPR001611	GO:0005515
	Lja3g4930	1030	CDD	STKc_IRAK	697	958	-	-
	Lja3g4930	1030	Gene3D	-	423	614	-	-
	Lja3g4930	1030	Gene3D	Ribonuclease Inhibitor	277	403	IPR032675	-
	Lja3g4930	1030	Pfam	Leucine rich repeat	282	323	IPR001611	GO:0005515
	Lja3g4930	1030	SMART	serkin_6	691	958	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4930	1030	SUPERFAMILY	L domain-like	93	382	-	-
	Lja3g4930	1030	Gene3D	Phosphorylase Kinase; domain 1	656	766	-	-
	Lja3g4930	1030	Gene3D	Ribonuclease Inhibitor	33	276	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4930	Lja-Chr3	91355390	91370018	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4930	145	997	Receptor kinase-like Gene Family	AT1G56120	65.263	0.0	1140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja3g4930		PK_Tyr_Ser-Thr	6.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4930	-		-	lang:109352863	1659.81