Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4920 ATGGCTGCGGCTACTGAGATTCCTTCCTCTGCTGATGCTGCTGCTGCTGCTGCTACTGGCAGCAAATTGGACTCAAAACCAAACCTGGATTCTGAATTCAACATGCAGAAACTTGTTGACATTTTCACCAAGTTGAATCCTTTGGCTGAGGAGTTTATCCCTTCATCCTATGCTGCTGCTGCCCACCGTGATCACCTTCATCAGGGCTTTAATCAGTGGTCACCTAACCCATTTCTGGTCAACAACAACAACAACAAGCCCTTAGCTGATGATCAGTACCCGAACGCGAACAATCGAAGGAGAAGAAACAATTTTAACCAAGGGGGAAGGAGATTTACTGGAAGAGTACTTAAGGCTCAGAGAGAAGACAGCGTTAGAAGAACGGTTTATGTTTCTGATATTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTCACCACTTGTGGATCAGTAATTGATTGTCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCAGATGAGTATGGTGCAAGGGCAGCTTTAAATCTCAGTGGCACTGTCCTTGGATACTATCCAGTCAGGGTGCTTCCTTCAAAAACTGCTATTCTTCCTGTGAATCCTACATTCCTTCCTAGGTCAGATGATGAGCGTGAAATGTGTTCCAGGACTGTCTACTGTACAAATATTGATAAAAAGGTTTCTCAGGCTGAAGTGAAGAATTTTTTTGAAATATCTTGTGGTGAGGTTACTCGCATACGGCTCTTGGGAGATCATGTGCATTCAACTCGAATTGCTTTCGTGGAATTTGCAATAGCAGAAAGTGCCATTATTGCCCTAAGTTGCAGTGGGATGCTCTTGGGAACCCAGCCAGTCAGGGTTAGCCCTTCAAAGACACCTGTGAGGCCAAGGGTTCCTCGCCCAACAACAGCACATTAG 942 0.4522 MAAATEIPSSADAAAAAATGSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYAAAAHRDHLHQGFNQWSPNPFLVNNNNNKPLADDQYPNANNRRRRNNFNQGGRRFTGRVLKAQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYGARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPVRVSPSKTPVRPRVPRPTTAH* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4920 313 MobiDBLite consensus disorder prediction 294 313 - -
Lja3g4920 313 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 311 - -
Lja3g4920 313 Gene3D - 81 203 IPR012677 -
Lja3g4920 313 Gene3D - 212 305 IPR012677 -
Lja3g4920 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 291 IPR000504 GO:0003723
Lja3g4920 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 191 IPR000504 GO:0003723
Lja3g4920 313 Pfam Ataxin-2 C-terminal region 41 56 IPR009818 -
Lja3g4920 313 SUPERFAMILY RNA-binding domain, RBD 99 203 IPR035979 GO:0003676
Lja3g4920 313 MobiDBLite consensus disorder prediction 82 110 - -
Lja3g4920 313 SUPERFAMILY RNA-binding domain, RBD 214 305 IPR035979 GO:0003676
Lja3g4920 313 SMART rrm1_1 128 198 IPR000504 GO:0003723
Lja3g4920 313 SMART rrm1_1 225 296 IPR000504 GO:0003723
Lja3g4920 313 MobiDBLite consensus disorder prediction 82 111 - -
Lja3g4920 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Lja3g4920 313 CDD RRM1_CID8_like 125 204 IPR034823 -
Lja3g4920 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 202 IPR000504 GO:0003723
Lja3g4920 313 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4920 Lja-Chr3 91250364 91256899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4920 115 281 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 3.06e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4920 - - lja:Lj3g3v0409470.1 531.176